PlantPromoterDB promoter information of AT3G01830.2

Summary of Gene (AT3G01830.2)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G01830 TAIR NCBI
Gene model	AT3G01830.2
Description	calmodulin-related protein, putative; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-HAND 1 (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), Calcium-binding EF-hand (InterPro:IPR002048), EF-Hand type (InterPro:IPR011992), EF hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calcium-binding EF hand family protein (TAIR:AT1G76650.1); Has 4435 Blast hits to 4399 proteins in 718 species: Archae - 0; Bacteria - 4; Metazoa - 1907; Fungi - 790; Plants - 1136; Viruses - 0; Other Eukaryotes - 598 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 295114-296313)

`Genome position from initiation codon` `AT3G01830.1 TSS from cDNA TSS information AT3G01830.2 5'->3' (+) Promoter sequence AT3G01820.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G01830.2

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 4 + 296060 -54

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	4	+	296060	-54

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone + 296062 -52

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	+	296062	-52

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box CTTCTATATATT + 296020 296031 -94 -83

Y Patch TCTTCTTC + 296095 296102 -19 -12

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`CTTCTATATATT`	+	296020	296031	-94	-83
Y Patch	`TCTTCTTC`	+	296095	296102	-19	-12
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 4 - 295458 AT3G01820.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	4	-	295458	AT3G01820.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone - 295475 AT3G01820.1

TSS clone C clone - 295459 AT3G01820.1

TSS clone G clone - 295457 AT3G01820.1

TSS clone C clone - 295451 AT3G01820.1

TSS clone T clone - 295433 AT3G01820.1

TSS clone T clone - 295429 AT3G01820.1

TSS clone T clone - 295408 AT3G01820.1

TSS clone T clone - 295399 AT3G01820.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	-	295475	AT3G01820.1
TSS clone	`C`	clone	-	295459	AT3G01820.1
TSS clone	`G`	clone	-	295457	AT3G01820.1
TSS clone	`C`	clone	-	295451	AT3G01820.1
TSS clone	`T`	clone	-	295433	AT3G01820.1
TSS clone	`T`	clone	-	295429	AT3G01820.1
TSS clone	`T`	clone	-	295408	AT3G01820.1
TSS clone	`T`	clone	-	295399	AT3G01820.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTCTCTCTTTCT - 295410 295423 AT3G01820.1

Y Patch CCCTCTCTTT - 295427 295436 AT3G01820.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTCTCTCTTTCT`	-	295410	295423	AT3G01820.1
Y Patch	`CCCTCTCTTT`	-	295427	295436	AT3G01820.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GTGGCAAT - 295512 295519 AT3G01820.1

AtREG654 GTGGCAAT PPDB Motif PLACE Motif GCCAC

REG GTGGCAAT - 295543 295550 AT3G01820.1

AtREG654 GTGGCAAT PPDB Motif PLACE Motif GCCAC

REG GTTTGGGCCTTAT - 295631 295643 AT3G01820.1

AtREG474 GTTTGGGC      PPDB Motif GCCCA PLACE Motif

AtREG373 TTTGGGCC     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356   TTGGGCCT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG353    TGGGCCTT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG351     GGGCCTTA PPDB Motif GCCCA PLACE Motif GGGCC

AtREG425      GGCCTTAT PPDB Motif AACCG(G/A) PLACE Motif

REG TGGGCTAA - 295649 295656 AT3G01820.1

AtREG571 TGGGCTAA PPDB Motif GCCCA PLACE Motif TGGGCY

REG TGGGCCAA - 295660 295667 AT3G01820.1

AtREG484 TGGGCCAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY