PlantPromoterDB promoter information of AT3G01910.1

Summary of Gene (AT3G01910.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G01910 TAIR NCBI
Gene model	AT3G01910.1
Description	Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor. It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum. SO protein has been found in all parts of the plant. The plant SO combines its enzymatic sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite.

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Overview

Focused view (chromosome 3: 318274-317075)

`Genome position from initiation codon` `AT3G01910.3 TSS from cDNA TSS information AT3G01910.1 5'->3' (-) Promoter sequence AT3G01920.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G01910.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 60 - 317312 -38

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	60	-	317312	-38

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone C clone - 317315 -41

TSS clone T clone - 317314 -40

TSS clone C clone - 317313 -39

TSS clone A clone - 317312 -38

TSS clone A clone - 317311 -37

TSS clone T clone - 317310 -36

TSS clone T clone - 317307 -33

TSS clone T clone - 317299 -25

TSS clone G clone - 317296 -22

TSS clone T clone - 317293 -19

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`C`	clone	-	317315	-41
TSS clone	`T`	clone	-	317314	-40
TSS clone	`C`	clone	-	317313	-39
TSS clone	`A`	clone	-	317312	-38
TSS clone	`A`	clone	-	317311	-37
TSS clone	`T`	clone	-	317310	-36
TSS clone	`T`	clone	-	317307	-33
TSS clone	`T`	clone	-	317299	-25
TSS clone	`G`	clone	-	317296	-22
TSS clone	`T`	clone	-	317293	-19

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCCTCCTC - 317284 317293 -10 -19

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCCTCCTC`	-	317284	317293	-10	-19
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AAAACGACGCCGTT - 317362 317375 -88 -101

AtREG520 AAAACGAC       PPDB Motif PLACE Motif

AtREG415 AAACGACG      PPDB Motif PLACE Motif

AtREG439   AACGACGC     PPDB Motif PLACE Motif

AtREG537    ACGACGCC    PPDB Motif PLACE Motif

AtREG540      GACGCCGT PPDB Motif PLACE Motif

AtREG497       ACGCCGTT PPDB Motif AAACG(C/G), CCAACGG PLACE Motif

REG GTTTGGGCTCAATTTGGGCTC - 317410 317430 -136 -156

AtREG474 GTTTGGGC              PPDB Motif GCCCA PLACE Motif

AtREG469 TTTGGGCT   TTTGGGCT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG533   TTGGGCTC   TTGGGCTC PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG485    TGGGCTCA           PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG421            ATTTGGGC   PPDB Motif GCCCA PLACE Motif

REG TAGGGCTT - 317598 317605 -324 -331

AtREG651 TAGGGCTT PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AAAACGACGCCGTT`		-	317362	317375	-88	-101
	AtREG520	`AAAACGAC`		PPDB Motif		PLACE Motif
	AtREG415	`AAACGACG`		PPDB Motif		PLACE Motif
	AtREG439	`AACGACGC`		PPDB Motif		PLACE Motif
	AtREG537	`ACGACGCC`		PPDB Motif		PLACE Motif
	AtREG540	`GACGCCGT`		PPDB Motif		PLACE Motif
	AtREG497	`ACGCCGTT`		PPDB Motif	`AAACG(C/G), CCAACGG`	PLACE Motif
REG	`GTTTGGGCTCAATTTGGGCTC`		-	317410	317430	-136	-156
	AtREG474	`GTTTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG469	`TTTGGGCT TTTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG533	`TTGGGCTC TTGGGCTC`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG485	`TGGGCTCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG421	`ATTTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TAGGGCTT`		-	317598	317605	-324	-331
	AtREG651	`TAGGGCTT`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak G clone + 317444 AT3G01920.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`G`	clone	+	317444	AT3G01920.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CGTCATTT - 317302 317309 AT3G01910.2

AtREG657 CGTCATTT PPDB Motif PLACE Motif