PlantPromoterDB promoter information of AT3G02050.1
Summary of Gene (AT3G02050.1)
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Overview
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Focused view (chromosome 3: 349815-351014)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G02050.1 5'->3' (+) Promoter sequence AT3G02040.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G02050.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 26 | + | 350616 | -199 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 350616 | -199 |
| TSS clone | A | clone | + | 350617 | -198 |
| TSS clone | G | clone | + | 350618 | -197 |
| TSS clone | C | clone | + | 350696 | -119 |
| TSS clone | A | clone | + | 350733 | -82 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TAAATGGGCCTTG | + | 350426 | 350438 | -389 | -377 | |||
| AtREG443 | TAAATGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG386 | AAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG361 | AATGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | ATGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG353 | TGGGCCTT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG398 | GGGCCTTG | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| REG | TGATGGGCTTTTA | + | 350487 | 350499 | -328 | -316 | |||
| AtREG635 | TGATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG378 | ATGGGCTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG376 | TGGGCTTT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG409 | GGGCTTTT | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG549 | GGCTTTTA | PPDB Motif | PLACE Motif | ||||||
| REG | AGCCCATAATGGGCCTGA | + | 350504 | 350521 | -311 | -294 | |||
| AtREG477 | AGCCCATA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG394 | GCCCATAA | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG546 | ATAATGGG | PPDB Motif | PLACE Motif | ||||||
| AtREG357 | TAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG361 | AATGGGCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG354 | ATGGGCCT | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG370 | TGGGCCTG | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG374 | GGGCCTGA | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | C | 5 | - | 349979 | AT3G02040.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | - | 350008 | AT3G02040.1 |
| TSS clone | T | clone | - | 349985 | AT3G02040.1 |
| TSS clone | T | clone | - | 349982 | AT3G02040.1 |
| TSS clone | C | clone | - | 349981 | AT3G02040.1 |
| TSS clone | A | clone | - | 349980 | AT3G02040.1 |
| TSS clone | C | clone | - | 349979 | AT3G02040.1 |
| TSS clone | A | clone | - | 349978 | AT3G02040.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCCCTCTCCTC | - | 349981 | 349991 | AT3G02040.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||