Summary of Gene (AT3G02220.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT3G02220.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 8 | - | 413597 | -61 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 413633 | -97 |
TSS clone | C | clone | - | 413629 | -93 |
TSS clone | C | clone | - | 413627 | -91 |
TSS clone | C | clone | - | 413622 | -86 |
TSS clone | A | clone | - | 413555 | -19 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTTCCTCT | - | 413572 | 413579 | -36 | -43 |
Y Patch | CCTCTTCTTC | - | 413598 | 413607 | -62 | -71 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TAATTGGG | - | 413646 | 413653 | -110 | -117 | |||
AtREG600 | TAATTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ATTGGGCCGT | - | 413681 | 413690 | -145 | -154 | |||
AtREG352 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG414 | TTGGGCCG | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG368 | TGGGCCGT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | AGATGGGCTTTTA | - | 413701 | 413713 | -165 | -177 | |||
AtREG572 | AGATGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG378 | ATGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG409 | GGGCTTTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG549 | GGCTTTTA | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |