Summary of Gene (AT3G02715.1)
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Overview |
Genome position
TSS from cDNA TSS information AT3G02715.1 5'->3' (-) Promoter sequence AT3G02740.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 41 | - | 589675 | AT3G02730.1 |
TSS peak | G | 8 | + | 590467 | AT3G02740.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | - | 589679 | AT3G02730.1 |
TSS clone | A | clone | - | 589677 | AT3G02730.1 |
TSS clone | C | clone | - | 589676 | AT3G02730.1 |
TSS clone | A | clone | - | 589675 | AT3G02730.1 |
TSS clone | T | clone | + | 590448 | AT3G02740.1 |
TSS clone | C | clone | + | 590468 | AT3G02740.1 |
TSS clone | C | clone | + | 590473 | AT3G02740.1 |
TSS clone | A | clone | + | 590475 | AT3G02740.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTTCTTCTTCTTCTTCTT | + | 590428 | 590445 | AT3G02740.1 | |
Y Patch | TTTCTTCTCTTC | + | 590498 | 590509 | AT3G02740.1 | |
Y Patch | CTCTCTCTCT | - | 589661 | 589670 | AT3G02730.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ACCGAACCG | - | 589884 | 589892 | AT3G02730.1 | ||||
AtREG451 | ACCGAACC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG456 | CCGAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |