PlantPromoterDB promoter information of AT3G02715.1
Summary of Gene (AT3G02715.1)
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Overview
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Focused view (chromosome 3: 590836-589637)
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Genome position
TSS from cDNA TSS information AT3G02715.1 5'->3' (-) Promoter sequence AT3G02740.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G02715.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | None | None | None | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 8 | + | 590467 | AT3G02740.1 |
| TSS peak | A | 41 | - | 589675 | AT3G02730.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | T | clone | + | 590448 | AT3G02740.1 |
| TSS clone | C | clone | + | 590468 | AT3G02740.1 |
| TSS clone | C | clone | + | 590473 | AT3G02740.1 |
| TSS clone | A | clone | + | 590475 | AT3G02740.1 |
| TSS clone | T | clone | - | 589679 | AT3G02730.1 |
| TSS clone | A | clone | - | 589677 | AT3G02730.1 |
| TSS clone | C | clone | - | 589676 | AT3G02730.1 |
| TSS clone | A | clone | - | 589675 | AT3G02730.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CTCTCTCTCT | - | 589661 | 589670 | AT3G02730.1 | |
| Y Patch | TTTCTTCTTCTTCTTCTT | + | 590428 | 590445 | AT3G02740.1 | |
| Y Patch | TTTCTTCTCTTC | + | 590498 | 590509 | AT3G02740.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | ACCGAACCG | - | 589884 | 589892 | AT3G02730.1 | ||||
| AtREG451 | ACCGAACC | PPDB Motif | PLACE Motif | ||||||
| AtREG456 | CCGAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||