Summary of Gene (AT3G02730)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G02730 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 41 | - | 589675 | -84 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 589679 | -88 |
TSS clone | A | clone | - | 589677 | -86 |
TSS clone | C | clone | - | 589676 | -85 |
TSS clone | A | clone | - | 589675 | -84 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTCTCTCT | - | 589661 | 589670 | -70 | -79 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACCGAACCG | - | 589884 | 589892 | -293 | -301 | |||
AtREG451 | ACCGAACC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG456 | CCGAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 18 | - | 582905 | AT3G02700.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | - | 582905 | AT3G02700.1 |
TSS clone | T | clone | - | 582867 | AT3G02700.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTTCTCTCTCT | - | 582861 | 582873 | AT3G02700.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAAGTCAA | - | 582961 | 582968 | AT3G02700.1 | ||||
AtREG632 | AAAGTCAA | PPDB Motif |   | PLACE Motif | TTGAC  | ||||
REG | GGGTCAAA | - | 582975 | 582982 | AT3G02700.1 | ||||
AtREG592 | GGGTCAAA | PPDB Motif |   | PLACE Motif | TTGAC, TTGACC  | ||||
REG | GGTGTCGTTTA | - | 583032 | 583042 | AT3G02700.1 | ||||
AtREG599 | GGTGTCGT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG527 | GTGTCGTT | DREB1Aox | PPDB Motif |   | PLACE Motif |   | |||
AtREG569 | TGTCGTTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG565 | GTCGTTTA | PPDB Motif |   | PLACE Motif |   | ||||
REG | TGAGGCCCAATG | - | 583050 | 583061 | AT3G02700.1 | ||||
AtREG587 | TGAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG447 | GAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG352 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG461 | GCCCAATG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ATTTGGGCTTTTT | - | 583086 | 583098 | AT3G02700.1 | ||||
AtREG421 | ATTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG469 | TTTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | TTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG376 | TGGGCTTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG409 | GGGCTTTT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG589 | GGCTTTTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTGACTTT | + | 582961 | 582968 | AT3G02710.1 | ||||
AtREG632 | TTGACTTT | PPDB Motif |   | PLACE Motif | TTGAC  | ||||
REG | TTTGACCC | + | 582975 | 582982 | AT3G02710.1 | ||||
AtREG592 | TTTGACCC | PPDB Motif |   | PLACE Motif | TTGAC, TTGACC  | ||||
REG | TAAACGACACC | + | 583032 | 583042 | AT3G02710.1 | ||||
AtREG565 | TAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG569 | AAACGACA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG527 | AACGACAC | DREB1Aox | PPDB Motif |   | PLACE Motif |   | |||
AtREG599 | ACGACACC | PPDB Motif |   | PLACE Motif |   | ||||
REG | CATTGGGCCTCA | + | 583050 | 583061 | AT3G02710.1 | ||||
AtREG461 | CATTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG352 | ATTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | TTGGGCCT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG447 | TGGGCCTC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG587 | GGGCCTCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  |