PlantPromoterDB promoter information of AT3G02730

Summary of Gene (AT3G02730)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G02730 TAIR NCBI
Gene model	AT3G02730
Description	THIOREDOXIN F-TYPE 1 (TRXF1); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: positive regulation of catalytic activity; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: ATF2; enzyme activator (TAIR:AT5G16400.1); Has 10196 Blast hits to 9837 proteins in 1664 species: Archae - 125; Bacteria - 4240; Metazoa - 1605; Fungi - 639; Plants - 965; Viruses - 3; Other Eukaryotes - 2619 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 583241-582042)

`Genome position from initiation codon` `AT3G02700.1 TSS from cDNA TSS information AT3G02730 5'->3' (-) Promoter sequence AT3G02710.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G02730

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 41 - 589675 -84

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	41	-	589675	-84

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone - 589679 -88

TSS clone A clone - 589677 -86

TSS clone C clone - 589676 -85

TSS clone A clone - 589675 -84

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	-	589679	-88
TSS clone	`A`	clone	-	589677	-86
TSS clone	`C`	clone	-	589676	-85
TSS clone	`A`	clone	-	589675	-84

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTCTCTCT - 589661 589670 -70 -79

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTCTCTCT`	-	589661	589670	-70	-79
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ACCGAACCG - 589884 589892 -293 -301

AtREG451 ACCGAACC PPDB Motif PLACE Motif

AtREG456 CCGAACCG PPDB Motif AACCG(G/A) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ACCGAACCG`		-	589884	589892	-293	-301
	AtREG451	`ACCGAACC`		PPDB Motif		PLACE Motif
	AtREG456	`CCGAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 18 - 582905 AT3G02700.1

TSS peak A 2 + 583116 AT3G02710.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	18	-	582905	AT3G02700.1
TSS peak	`A`	2	+	583116	AT3G02710.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone G clone - 582905 AT3G02700.1

TSS clone T clone - 582867 AT3G02700.1

TSS clone G clone + 583113 AT3G02710.1

TSS clone A clone + 583168 AT3G02710.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`G`	clone	-	582905	AT3G02700.1
TSS clone	`T`	clone	-	582867	AT3G02700.1
TSS clone	`G`	clone	+	583113	AT3G02710.1
TSS clone	`A`	clone	+	583168	AT3G02710.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTTCTCTCTCT - 582861 582873 AT3G02700.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTTCTCTCTCT`	-	582861	582873	AT3G02700.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TTGACTTT + 582961 582968 AT3G02710.1

AtREG632 TTGACTTT PPDB Motif PLACE Motif TTGAC

REG TTTGACCC + 582975 582982 AT3G02710.1

AtREG592 TTTGACCC PPDB Motif PLACE Motif TTGAC, TTGACC

REG TAAACGACACC + 583032 583042 AT3G02710.1

AtREG565 TAAACGAC    PPDB Motif PLACE Motif

AtREG569 AAACGACA   PPDB Motif PLACE Motif

AtREG527   AACGACAC DREB1Aox PPDB Motif PLACE Motif

AtREG599    ACGACACC PPDB Motif PLACE Motif

REG CATTGGGCCTCA + 583050 583061 AT3G02710.1

AtREG461 CATTGGGC     PPDB Motif GCCCA PLACE Motif

AtREG352 ATTGGGCC    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356   TTGGGCCT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG447    TGGGCCTC PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG587     GGGCCTCA PPDB Motif GCCCA PLACE Motif GGGCC

REG AAAGTCAA - 582961 582968 AT3G02700.1

AtREG632 AAAGTCAA PPDB Motif PLACE Motif TTGAC

REG GGGTCAAA - 582975 582982 AT3G02700.1

AtREG592 GGGTCAAA PPDB Motif PLACE Motif TTGAC, TTGACC

REG GGTGTCGTTTA - 583032 583042 AT3G02700.1

AtREG599 GGTGTCGT    PPDB Motif PLACE Motif

AtREG527 GTGTCGTT   DREB1Aox PPDB Motif PLACE Motif

AtREG569   TGTCGTTT PPDB Motif PLACE Motif

AtREG565    GTCGTTTA PPDB Motif PLACE Motif

REG TGAGGCCCAATG - 583050 583061 AT3G02700.1

AtREG587 TGAGGCCC     PPDB Motif GCCCA PLACE Motif GGGCC

AtREG447 GAGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356   AGGCCCAA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352    GGCCCAAT PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG461     GCCCAATG PPDB Motif GCCCA PLACE Motif

REG ATTTGGGCTTTTT - 583086 583098 AT3G02700.1

AtREG421 ATTTGGGC      PPDB Motif GCCCA PLACE Motif

AtREG469 TTTGGGCT     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   TTGGGCTT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376    TGGGCTTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG409     GGGCTTTT PPDB Motif GCCCA PLACE Motif

AtREG589      GGCTTTTT PPDB Motif PLACE Motif