PlantPromoterDB promoter information of AT3G03160.1

Summary of Gene (AT3G03160.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G03160 TAIR NCBI
Gene model	AT3G03160.1
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17190.1); Has 58 Blast hits to 58 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 728876-730075)

`Genome position from initiation codon` `TSS from cDNA TSS information AT3G03160.1 5'->3' (+) Promoter sequence AT3G03150.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G03160.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone + 729768 -108

TSS clone peak A clone + 729800 -76

TSS clone C clone + 729806 -70

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	+	729768	-108
TSS clone peak	`A`	clone	+	729800	-76
TSS clone	`C`	clone	+	729806	-70

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTCTCTT + 729771 729779 -105 -97

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTCTCTT`	+	729771	729779	-105	-97
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ATCCACGTGTCT + 729545 729556 -331 -320

AtREG547 ATCCACGT     ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG408 TCCACGTG    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG382   CCACGTGT   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG366    CACGTGTC ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG470     ACGTGTCT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

REG TGCCGTTT + 729571 729578 -305 -298

AtREG500 TGCCGTTT PPDB Motif AAACG(C/G) PLACE Motif

REG GACGCCGTT + 729586 729594 -290 -282

AtREG540 GACGCCGT PPDB Motif PLACE Motif

AtREG497 ACGCCGTT PPDB Motif AAACG(C/G), CCAACGG PLACE Motif

REG TTTTGGGCCGA + 729670 729680 -206 -196

AtREG529 TTTTGGGC    PPDB Motif GCCCA PLACE Motif

AtREG373 TTTGGGCC   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG414   TTGGGCCG PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG393    TGGGCCGA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

REG TCAGCCCATTTAAGCCCATTT + 729693 729713 -183 -163

AtREG609 TCAGCCCA              PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG372   AGCCCATT  AGCCCATT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG386    GCCCATTT  GCCCATTT PPDB Motif GCCCA PLACE Motif

AtREG443     CCCATTTA          PPDB Motif GCCCA PLACE Motif

AtREG426           TAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378            AAGCCCAT   PPDB Motif GCCCA PLACE Motif TGGGCY

REG ACACGCGT + 729734 729741 -142 -135

AtREG536 ACACGCGT ABA, Drought PPDB Motif PLACE Motif ACACNNG

REG CCGCCACGTGTA + 729745 729756 -131 -120

AtREG560 CCGCCACG     ABA PPDB Motif CCGAC PLACE Motif GCCAC

AtREG371 CGCCACGT    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG367   GCCACGTG   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC

AtREG382    CCACGTGT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG453     CACGTGTA ABA, DREB1Aox PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACACNNG

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ATCCACGTGTCT`		+	729545	729556	-331	-320
	AtREG547	`ATCCACGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG`
	AtREG408	`TCCACGTG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG`
	AtREG382	`CCACGTGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG366	`CACGTGTC`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC`
	AtREG470	`ACGTGTCT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACGTGKC, ACGTGTC`
REG	`TGCCGTTT`		+	729571	729578	-305	-298
	AtREG500	`TGCCGTTT`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
REG	`GACGCCGTT`		+	729586	729594	-290	-282
	AtREG540	`GACGCCGT`		PPDB Motif		PLACE Motif
	AtREG497	`ACGCCGTT`		PPDB Motif	`AAACG(C/G), CCAACGG`	PLACE Motif
REG	`TTTTGGGCCGA`		+	729670	729680	-206	-196
	AtREG529	`TTTTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG373	`TTTGGGCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG414	`TTGGGCCG`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG393	`TGGGCCGA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
REG	`TCAGCCCATTTAAGCCCATTT`		+	729693	729713	-183	-163
	AtREG609	`TCAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG372	`AGCCCATT AGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG386	`GCCCATTT GCCCATTT`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG443	`CCCATTTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG426	`TAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`AAGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
REG	`ACACGCGT`		+	729734	729741	-142	-135
	AtREG536	`ACACGCGT`	ABA, Drought	PPDB Motif		PLACE Motif	`ACACNNG`
REG	`CCGCCACGTGTA`		+	729745	729756	-131	-120
	AtREG560	`CCGCCACG`	ABA	PPDB Motif	`CCGAC`	PLACE Motif	`GCCAC`
	AtREG371	`CGCCACGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, GCCAC, ACGTGKC`
	AtREG367	`GCCACGTG`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC`
	AtREG382	`CCACGTGT`	ABA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
	AtREG453	`CACGTGTA`	ABA, DREB1Aox	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, ACACNNG`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 182 - 729454 AT3G03150.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	182	-	729454	AT3G03150.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone - 729456 AT3G03150.1

TSS clone A clone - 729454 AT3G03150.1

TSS clone T clone - 729453 AT3G03150.1

TSS clone T clone - 729450 AT3G03150.1

TSS clone A clone - 729440 AT3G03150.1

TSS clone G clone - 729418 AT3G03150.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	-	729456	AT3G03150.1
TSS clone	`A`	clone	-	729454	AT3G03150.1
TSS clone	`T`	clone	-	729453	AT3G03150.1
TSS clone	`T`	clone	-	729450	AT3G03150.1
TSS clone	`A`	clone	-	729440	AT3G03150.1
TSS clone	`G`	clone	-	729418	AT3G03150.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box CATATATATAAGC - 729478 729490 AT3G03150.1

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`CATATATATAAGC`	-	729478	729490	AT3G03150.1
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG AGACACGTGGAT - 729545 729556 AT3G03150.1

AtREG470 AGACACGT     ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, ACGTGKC, ACGTGTC

AtREG366 GACACGTG    ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC

AtREG382   ACACGTGG   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

AtREG408    CACGTGGA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG547     ACGTGGAT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG AAACGGCA - 729571 729578 AT3G03150.1

AtREG500 AAACGGCA PPDB Motif AAACG(C/G) PLACE Motif

REG AACGGCGTC - 729586 729594 AT3G03150.1

AtREG497 AACGGCGT PPDB Motif AAACG(C/G), CCAACGG PLACE Motif

AtREG540 ACGGCGTC PPDB Motif PLACE Motif

REG TCGGCCCAAAA - 729670 729680 AT3G03150.1

AtREG393 TCGGCCCA    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG414 CGGCCCAA   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG373   GGCCCAAA PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG529    GCCCAAAA PPDB Motif GCCCA PLACE Motif

REG AAATGGGCTTAAATGGGCTGA - 729693 729713 AT3G03150.1

AtREG386 AAATGGGC  AAATGGGC    PPDB Motif GCCCA PLACE Motif

AtREG372 AATGGGCT  AATGGGCT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378   ATGGGCTT            PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG426    TGGGCTTA           PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG443          TAAATGGG     PPDB Motif GCCCA PLACE Motif

AtREG609              TGGGCTGA PPDB Motif GCCCA PLACE Motif TGGGCY

REG ACGCGTGT - 729734 729741 AT3G03150.1

AtREG536 ACGCGTGT ABA, Drought PPDB Motif PLACE Motif ACACNNG

REG CACGTGGCGG - 729745 729754 AT3G03150.1

AtREG367 CACGTGGC   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, CACGTG, ACGTGKC, CACGTGGC

AtREG371 ACGTGGCG ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG560   CGTGGCGG ABA PPDB Motif CCGAC PLACE Motif GCCAC