PlantPromoterDB promoter information of AT3G03250.1
Summary of Gene (AT3G03250.1)
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Overview
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Focused view (chromosome 3: 755014-753815)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G03250.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G03250.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 18 | - | 754100 | -86 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 754159 | -145 |
| TSS clone | C | clone | - | 754158 | -144 |
| TSS clone | T | clone | - | 754153 | -139 |
| TSS clone | G | clone | - | 754100 | -86 |
| TSS clone | C | clone | - | 754099 | -85 |
| TSS clone | A | clone | - | 754084 | -70 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GCCTATAAATA | - | 754126 | 754136 | -112 | -122 |
| Y Patch | TCCTCTCTTC | - | 754066 | 754075 | -52 | -61 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTGACACGTGTA | - | 754225 | 754236 | -211 | -222 | |||
| AtREG498 | GTGACACG | ABA | PPDB Motif | PLACE Motif | |||||
| AtREG389 | TGACACGT | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| AtREG366 | GACACGTG | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG453 | CACGTGTA | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
| REG | TGTTGGGCTATT | - | 754387 | 754398 | -373 | -384 | |||
| AtREG543 | TGTTGGGC | PPDB Motif | GCCCA | PLACE Motif | CAACA | ||||
| AtREG574 | GTTGGGCT | PPDB Motif | GCCCA, CCAACGG | PLACE Motif | TGGGCY | ||||
| AtREG584 | GGGCTATT | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||