PlantPromoterDB promoter information of AT3G03780.3
Summary of Gene (AT3G03780.3)
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Overview
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Focused view (chromosome 3: 956602-957801)
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Genome position
from initiation codon AT3G03780.2 TSS from cDNA TSS information AT3G03780.3 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G03780.3
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 12 | + | 957088 | -514 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 957086 | -516 |
| TSS clone | G | clone | + | 957088 | -514 |
| TSS clone | T | clone | + | 957089 | -513 |
| TSS clone | C | clone | + | 957092 | -510 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TTGCTATAAATA | + | 957051 | 957062 | -551 | -540 |
| Y Patch | CTCTCTTT | + | 957092 | 957099 | -510 | -503 |
| Y Patch | CATCTCTCAT | + | 957103 | 957112 | -499 | -490 |
| Y Patch | CTCTTCTC | + | 957118 | 957125 | -484 | -477 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | GTAAACCGT | + | 956792 | 956800 | -810 | -802 | |||
| AtREG519 | GTAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG652 | TAAACCGT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||