PlantPromoterDB promoter information of AT3G04120.1
Summary of Gene (AT3G04120.1)
|
Overview
|
Focused view (chromosome 3: 1080077-1081276)
|
Genome position
from initiation codon TSS from cDNA TSS information AT3G04120.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT3G04120.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 110 | + | 1080998 | -79 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 1080965 | -112 |
| TSS clone | C | clone | + | 1080966 | -111 |
| TSS clone | A | clone | + | 1080998 | -79 |
| TSS clone | C | clone | + | 1080999 | -78 |
| TSS clone | A | clone | + | 1081002 | -75 |
| TSS clone | C | clone | + | 1081003 | -74 |
| TSS clone | C | clone | + | 1081004 | -73 |
| TSS clone | T | clone | + | 1081007 | -70 |
| TSS clone | C | clone | + | 1081030 | -47 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCTTCTCTCTTT | + | 1080957 | 1080969 | -120 | -108 |
| Y Patch | TCTCTCTCT | + | 1081020 | 1081028 | -57 | -49 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGCTGCG | + | 1080705 | 1080712 | -372 | -365 | |||
| AtREG369 | ACGCTGCG | PPDB Motif | PLACE Motif | ||||||
| REG | ACCCGACCCG | + | 1080723 | 1080732 | -354 | -345 | |||
| AtREG405 | ACCCGACC | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| AtREG442 | CCCGACCC | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| AtREG375 | CCGACCCG | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| REG | AGCGCGTGA | + | 1080762 | 1080770 | -315 | -307 | |||
| AtREG381 | AGCGCGTG | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG395 | GCGCGTGA | PPDB Motif | ACGCGC | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||