Summary of Gene (AT3G04600.3)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT3G04600.2 TSS from cDNA TSS information AT3G04600.3 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | T | 4 | + | 1242973 | -179 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 1242973 | -179 |
TSS clone | G | clone | + | 1242983 | -169 |
TSS clone | A | clone | + | 1242987 | -165 |
TSS clone | T | clone | + | 1242988 | -164 |
TSS clone | A | clone | + | 1242993 | -159 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TAAATATA | + | 1242939 | 1242946 | -213 | -206 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATAAACCGGAC | + | 1242689 | 1242699 | -463 | -453 | |||
AtREG598 | ATAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG573 | AACCGGAC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | AAATGACG | + | 1242828 | 1242835 | -324 | -317 | |||
AtREG657 | AAATGACG | PPDB Motif |   | PLACE Motif |   | ||||
REG | TTTTGGGCCA | + | 1242849 | 1242858 | -303 | -294 | |||
AtREG529 | TTTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG373 | TTTGGGCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG420 | TTGGGCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
REG | AGGGGTAA | + | 1242866 | 1242873 | -286 | -279 | |||
AtREG642 | AGGGGTAA | PPDB Motif | ACCCCT  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |