PlantPromoterDB promoter information of AT3G04930.1
Summary of Gene (AT3G04930.1)
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Overview
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Focused view (chromosome 3: 1362029-1363228)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G04930.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G04930.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 17 | + | 1362903 | -126 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | G | clone | + | 1362914 | -115 |
| TSS clone | G | clone | + | 1362943 | -86 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CCTTCTCTCC | + | 1362928 | 1362937 | -101 | -92 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGGTTTAG | + | 1362627 | 1362635 | -402 | -394 | |||
| AtREG652 | ACGGTTTA | PPDB Motif | PLACE Motif | ||||||
| AtREG511 | CGGTTTAG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | AACCGCGT | + | 1362696 | 1362703 | -333 | -326 | |||
| AtREG441 | AACCGCGT | Drought | PPDB Motif | PLACE Motif | |||||
| REG | ACGTCACG | + | 1362750 | 1362757 | -279 | -272 | |||
| AtREG489 | ACGTCACG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT | |||
| REG | AAGCGCGTGT | + | 1362782 | 1362791 | -247 | -238 | |||
| AtREG492 | AAGCGCGT | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG381 | AGCGCGTG | PPDB Motif | ACGCGC | PLACE Motif | |||||
| AtREG385 | GCGCGTGT | PPDB Motif | ACGCGC | PLACE Motif | ACACNNG | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||