PlantPromoterDB promoter information of AT3G05020
Summary of Gene (AT3G05020)
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Overview
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Focused view (chromosome 3: 1393878-1392679)
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Genome position
from initiation codon AT3G05030.1 AT3G05030.2 TSS from cDNA TSS information AT3G05020 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G05020
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 42 | - | 1392945 | -67 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 1392954 | -76 |
| TSS clone | C | clone | - | 1392953 | -75 |
| TSS clone | T | clone | - | 1392944 | -66 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTTATAAATG | - | 1392977 | 1392986 | -99 | -108 |
| Y Patch | TCTCTTCTCTCTC | - | 1392896 | 1392908 | -18 | -30 |
| Y Patch | TCTCTTTC | - | 1392915 | 1392922 | -37 | -44 |
| Y Patch | CCCTCTCTCCC | - | 1392925 | 1392935 | -47 | -57 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AACGACGTC | - | 1393007 | 1393015 | -129 | -137 | |||
| AtREG493 | AACGACGT | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
| AtREG431 | ACGACGTC | PPDB Motif | ACGT | PLACE Motif | ACGT | ||||
| REG | AAAGCCCAT | - | 1393029 | 1393037 | -151 | -159 | |||
| AtREG376 | AAAGCCCA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG378 | AAGCCCAT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | AAATGGGCTGA | - | 1393052 | 1393062 | -174 | -184 | |||
| AtREG386 | AAATGGGC | PPDB Motif | GCCCA | PLACE Motif | |||||
| AtREG372 | AATGGGCT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| AtREG609 | TGGGCTGA | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
| REG | ATCCGGTTAAA | - | 1393080 | 1393090 | -202 | -212 | |||
| AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG621 | TCCGGTTA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG501 | CCGGTTAA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| AtREG645 | CGGTTAAA | PPDB Motif | AACCG(G/A) | PLACE Motif | CNGTTR | ||||
| REG | CGGTTTGG | - | 1393134 | 1393141 | -256 | -263 | |||
| AtREG550 | CGGTTTGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||