Summary of Gene (AT3G06140)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT3G06140 5'->3' (-) Promoter sequence AT3G06142.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 5 | - | 1858846 | -69 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCTTCTTCT | - | 1858867 | 1858876 | -90 | -99 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | AAAGTCAA | - | 1858914 | 1858921 | -137 | -144 | |||
AtREG632 | AAAGTCAA | PPDB Motif |   | PLACE Motif | TTGAC  | ||||
REG | TCGGTTTAA | - | 1858937 | 1858945 | -160 | -168 | |||
AtREG514 | TCGGTTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG473 | CGGTTTAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | CCAAACCGGAAA | - | 1858962 | 1858973 | -185 | -196 | |||
AtREG550 | CCAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG496 | CAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | AAACCGGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG534 | AACCGGAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG644 | ACCGGAAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TTAAACCGAAC | - | 1858986 | 1858996 | -209 | -219 | |||
AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG514 | TAAACCGA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG556 | AACCGAAC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | AAAGTCAA | - | 1859089 | 1859096 | -312 | -319 | |||
AtREG632 | AAAGTCAA | PPDB Motif |   | PLACE Motif | TTGAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |