PlantPromoterDB promoter information of AT3G06270.1

Summary of Gene (AT3G06270.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G06270 TAIR NCBI
Gene model	AT3G06270.1
Description	protein phosphatase 2C, putative / PP2C, putative; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation, N-terminal protein myristoylation; LOCATED IN: plasma membrane; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: ATP binding / cAMP-dependent protein kinase regulator/ catalytic/ protein kinase/ protein serine/threonine phosphatase (TAIR:AT2G20050.1); Has 3686 Blast hits to 3670 proteins in 257 species: Archae - 2; Bacteria - 83; Metazoa - 1132; Fungi - 383; Plants - 1219; Viruses - 4; Other Eukaryotes - 863 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 1895763-1896962)

`Genome position from initiation codon` `TSS from cDNA TSS information AT3G06270.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G06270.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak T clone + 1896136 -627

TSS clone peak G clone + 1896283 -480

TSS clone peak C clone + 1896327 -436

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`T`	clone	+	1896136	-627
TSS clone peak	`G`	clone	+	1896283	-480
TSS clone peak	`C`	clone	+	1896327	-436

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CATCTCTCTCTCTCTCTCTCTCTCTCTTCTTCTTCGTCTTCTTCTCTT + 1896248 1896295 -515 -468

Y Patch CTTTCTTC + 1896302 1896309 -461 -454

Y Patch CTTTCTCT + 1896362 1896369 -401 -394

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CATCTCTCTCTCTCTCTCTCTCTCTCTTCTTCTTCGTCTTCTTCTCTT`	+	1896248	1896295	-515	-468
Y Patch	`CTTTCTTC`	+	1896302	1896309	-461	-454
Y Patch	`CTTTCTCT`	+	1896362	1896369	-401	-394
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GGGCCTTAGGCCCATTAG + 1896006 1896023 -757 -740

AtREG351 GGGCCTTA           PPDB Motif GCCCA PLACE Motif GGGCC

AtREG577 GGCCTTAG          PPDB Motif PLACE Motif

AtREG563     CTTAGGCC       PPDB Motif PLACE Motif

AtREG360      TTAGGCCC      PPDB Motif GCCCA PLACE Motif GGGCC

AtREG358       TAGGCCCA     PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG354        AGGCCCAT    PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG361         GGCCCATT   PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG357          GCCCATTA PPDB Motif GCCCA PLACE Motif

AtREG558           CCCATTAG PPDB Motif GCCCA PLACE Motif

REG TCGGGTCGA + 1896047 1896055 -716 -708

AtREG383 TCGGGTCG PPDB Motif PLACE Motif

AtREG539 CGGGTCGA PPDB Motif PLACE Motif

REG ACCCGACCCGAA + 1896070 1896081 -693 -682

AtREG405 ACCCGACC     PPDB Motif CCGAC PLACE Motif CCGAC

AtREG442 CCCGACCC    PPDB Motif CCGAC PLACE Motif CCGAC

AtREG375   CCGACCCG   PPDB Motif CCGAC PLACE Motif CCGAC

AtREG383    CGACCCGA PPDB Motif PLACE Motif

AtREG597     GACCCGAA PPDB Motif GGGACCC PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GGGCCTTAGGCCCATTAG`		+	1896006	1896023	-757	-740
	AtREG351	`GGGCCTTA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG577	`GGCCTTAG`		PPDB Motif		PLACE Motif
	AtREG563	`CTTAGGCC`		PPDB Motif		PLACE Motif
	AtREG360	`TTAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG358	`TAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG354	`AGGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG361	`GGCCCATT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG357	`GCCCATTA`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG558	`CCCATTAG`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`TCGGGTCGA`		+	1896047	1896055	-716	-708
	AtREG383	`TCGGGTCG`		PPDB Motif		PLACE Motif
	AtREG539	`CGGGTCGA`		PPDB Motif		PLACE Motif
REG	`ACCCGACCCGAA`		+	1896070	1896081	-693	-682
	AtREG405	`ACCCGACC`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG442	`CCCGACCC`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG375	`CCGACCCG`		PPDB Motif	`CCGAC`	PLACE Motif	`CCGAC`
	AtREG383	`CGACCCGA`		PPDB Motif		PLACE Motif
	AtREG597	`GACCCGAA`		PPDB Motif	`GGGACCC`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None