Summary of Gene (AT3G06430.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT3G06430.1 5'->3' (-) Promoter sequence AT3G06433.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 2 | - | 1958298 | -58 |
TSS peak | A | 2 | - | 1958276 | -36 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | - | 1958299 | -59 |
TSS clone | G | clone | - | 1958254 | -14 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TTATATAAACC | - | 1958326 | 1958336 | -86 | -96 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATAAACCGGT | - | 1958323 | 1958332 | -83 | -92 | |||
AtREG598 | ATAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG436 | AAACCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TTTCCGGTTCGGTT | - | 1958335 | 1958348 | -95 | -108 | |||
AtREG644 | TTTCCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG534 | TTCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG579 | TCCGGTTC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG423 | CCGGTTCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG456 | CGGTTCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG451 | GGTTCGGT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | ATCCGGTTTT | - | 1958375 | 1958384 | -135 | -144 | |||
AtREG561 | ATCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG521 | TCCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG542 | CCGGTTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |