Summary of Gene (AT3G06730.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G06730.1 5'->3' (+) Promoter sequence AT3G06750.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | T | 8 | + | 2123477 | -799 |
TSS peak | A | 2 | + | 2124249 | -27 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 2124217 | -59 |
TSS clone | A | clone | + | 2124221 | -55 |
TSS clone | T | clone | + | 2124250 | -26 |
TSS clone | A | clone | + | 2124259 | -17 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTGACTTT | + | 2124135 | 2124142 | -141 | -134 | |||
AtREG632 | TTGACTTT | PPDB Motif |   | PLACE Motif | TTGAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 60 | - | 2130315 | AT3G06750.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | - | 2130315 | AT3G06750.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCTCTCTTC | - | 2130269 | 2130280 | AT3G06750.1 | |
Y Patch | CTTCTTCTCTCTCTCTTTTCTTCTT | - | 2130284 | 2130308 | AT3G06750.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |