Summary of Gene (AT3G06730.1)
|
Overview |
Genome position
from initiation codon AT3G06760.2 TSS from cDNA TSS information AT3G06730.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | T | 8 | + | 2123477 | -799 |
TSS peak | A | 2 | + | 2124249 | -27 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | + | 2124217 | -59 |
TSS clone | A | clone | + | 2124221 | -55 |
TSS clone | T | clone | + | 2124250 | -26 |
TSS clone | A | clone | + | 2124259 | -17 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTGACTTT | + | 2124135 | 2124142 | -141 | -134 | |||
AtREG632 | TTGACTTT | PPDB Motif |   | PLACE Motif | TTGAC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 4 | + | 2132780 | AT3G06760.1, AT3G06760.2 |
TSS peak | A | 4 | + | 2132808 | AT3G06760.1, AT3G06760.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | C | clone | + | 2132837 | AT3G06760.1, AT3G06760.2 |
TSS clone | C | clone | + | 2132840 | AT3G06760.1, AT3G06760.2 |
TSS clone | T | clone | + | 2132857 | AT3G06760.1, AT3G06760.2 |
TSS clone | T | clone | + | 2132895 | AT3G06760.1, AT3G06760.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTTCTTCTTCC | + | 2132827 | 2132837 | AT3G06760.1, AT3G06760.2 | |
Y Patch | TTTCTCTCTCTCTC | + | 2132843 | 2132856 | AT3G06760.1, AT3G06760.2 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TACACGTGTGA | + | 2132629 | 2132639 | AT3G06760.1, AT3G06760.2 | ||||
AtREG453 | TACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACACNNG  | |||
AtREG460 | CACGTGTG | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG  | |||
AtREG588 | ACGTGTGA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
REG | CCAAACCGCGTGAAACGAC | + | 2132683 | 2132701 | AT3G06760.1, AT3G06760.2 | ||||
AtREG550 | CCAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG441 | AACCGCGT | Drought | PPDB Motif |   | PLACE Motif |   | |||
AtREG502 | CCGCGTGA | Drought | PPDB Motif |   | PLACE Motif |   | |||
AtREG631 | CGCGTGAA | Drought | PPDB Motif |   | PLACE Motif |   | |||
AtREG576 | GAAACGAC | PPDB Motif |   | PLACE Motif |   |