PlantPromoterDB promoter information of AT3G06760.2
Summary of Gene (AT3G06760.2)
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Overview
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Focused view (chromosome 3: 2132271-2133470)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G06760.2 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G06760.2
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 4 | + | 2132780 | -191 |
| TSS peak | A | 4 | + | 2132808 | -163 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | + | 2132837 | -134 |
| TSS clone | C | clone | + | 2132840 | -131 |
| TSS clone | T | clone | + | 2132857 | -114 |
| TSS clone | T | clone | + | 2132895 | -76 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTTCTTCTTCC | + | 2132827 | 2132837 | -144 | -134 |
| Y Patch | TTTCTCTCTCTCTC | + | 2132843 | 2132856 | -128 | -115 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TACACGTGTGA | + | 2132629 | 2132639 | -342 | -332 | |||
| AtREG453 | TACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACACNNG | |||
| AtREG460 | CACGTGTG | ABA, DREB1Aox | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG588 | ACGTGTGA | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG | |||
| REG | CCAAACCGCGTGAAACGAC | + | 2132683 | 2132701 | -288 | -270 | |||
| AtREG550 | CCAAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG441 | AACCGCGT | Drought | PPDB Motif | PLACE Motif | |||||
| AtREG502 | CCGCGTGA | Drought | PPDB Motif | PLACE Motif | |||||
| AtREG631 | CGCGTGAA | Drought | PPDB Motif | PLACE Motif | |||||
| AtREG576 | GAAACGAC | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||