PlantPromoterDB promoter information of AT3G06778.1

Summary of Gene (AT3G06778.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G06778 TAIR NCBI
Gene model	AT3G06778.1
Description	heat shock protein binding / unfolded protein binding; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G49060.1); Has 13003 Blast hits to 13003 proteins in 1807 species: Archae - 91; Bacteria - 4518; Metazoa - 2691; Fungi - 972; Plants - 1000; Viruses - 10; Other Eukaryotes - 3721 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 2138137-2136938)

`Genome position from initiation codon` `AT3G06770.1 AT3G06770.2 TSS from cDNA TSS information AT3G06778.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G06778.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak A clone - 2141523 -86

TSS clone peak A clone - 2141522 -85

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`A`	clone	-	2141523	-86
TSS clone peak	`A`	clone	-	2141522	-85

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 8 - 2137334 AT3G06770.3, AT3G06770.1, AT3G06770.2

TSS peak G 5 - 2137122 AT3G06770.3, AT3G06770.1, AT3G06770.2

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	8	-	2137334	AT3G06770.3, AT3G06770.1, AT3G06770.2
TSS peak	`G`	5	-	2137122	AT3G06770.3, AT3G06770.1, AT3G06770.2

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone - 2137129 AT3G06770.3, AT3G06770.1, AT3G06770.2

TSS clone T clone - 2136977 AT3G06770.3, AT3G06770.1

TSS clone G clone - 2136962 AT3G06770.3, AT3G06770.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	-	2137129	AT3G06770.3, AT3G06770.1, AT3G06770.2
TSS clone	`T`	clone	-	2136977	AT3G06770.3, AT3G06770.1
TSS clone	`G`	clone	-	2136962	AT3G06770.3, AT3G06770.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTTCTCTTCTTCTTCTCTCTCTCTCTCTCTCT - 2137123 2137156 AT3G06770.1, AT3G06770.2, AT3G06770.3

Y Patch TCCTTCTCCTTCT - 2137160 2137172 AT3G06770.1, AT3G06770.2, AT3G06770.3

Y Patch CTTTCTTCT - 2137303 2137311 AT3G06770.1, AT3G06770.2, AT3G06770.3

Y Patch TCTTCTTCCTTC - 2137321 2137332 AT3G06770.1, AT3G06770.2, AT3G06770.3

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTTCTCTTCTTCTTCTCTCTCTCTCTCTCTCT`	-	2137123	2137156	AT3G06770.1, AT3G06770.2, AT3G06770.3
Y Patch	`TCCTTCTCCTTCT`	-	2137160	2137172	AT3G06770.1, AT3G06770.2, AT3G06770.3
Y Patch	`CTTTCTTCT`	-	2137303	2137311	AT3G06770.1, AT3G06770.2, AT3G06770.3
Y Patch	`TCTTCTTCCTTC`	-	2137321	2137332	AT3G06770.1, AT3G06770.2, AT3G06770.3
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CCCATTAA - 2137523 2137530 AT3G06770.1, AT3G06770.2, AT3G06770.3

AtREG396 CCCATTAA PPDB Motif GCCCA PLACE Motif TTAATGG