PlantPromoterDB promoter information of AT3G06778.1

Summary of Gene (AT3G06778.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G06778 TAIR NCBI
Gene model	AT3G06778.1
Description	heat shock protein binding / unfolded protein binding; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT5G49060.1); Has 13003 Blast hits to 13003 proteins in 1807 species: Archae - 91; Bacteria - 4518; Metazoa - 2691; Fungi - 972; Plants - 1000; Viruses - 10; Other Eukaryotes - 3721 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 2146487-2145288)

`Genome position from initiation codon` `AT3G06790.1 AT3G06790.2 TSS from cDNA TSS information AT3G06778.1 5'->3' (-) Promoter sequence AT3G06810.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G06778.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone peak A clone - 2141523 -86

TSS clone peak A clone - 2141522 -85

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone peak	`A`	clone	-	2141523	-86
TSS clone peak	`A`	clone	-	2141522	-85

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak A 5 + 2146486 AT3G06810.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`A`	5	+	2146486	AT3G06810.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone peak G clone - 2145776 AT3G06790.1, AT3G06790.2

TSS clone peak C clone - 2145749 AT3G06790.1, AT3G06790.2

TSS clone A clone + 2146336 AT3G06810.1

TSS clone T clone + 2146462 AT3G06810.1

TSS clone T clone + 2146480 AT3G06810.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone peak	`G`	clone	-	2145776	AT3G06790.1, AT3G06790.2
TSS clone peak	`C`	clone	-	2145749	AT3G06790.1, AT3G06790.2
TSS clone	`A`	clone	+	2146336	AT3G06810.1
TSS clone	`T`	clone	+	2146462	AT3G06810.1
TSS clone	`T`	clone	+	2146480	AT3G06810.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CAAAGGCCCACTAAGCCCATATA - 2145808 2145830 AT3G06790.1, AT3G06790.2

AtREG656 CAAAGGCC                PPDB Motif PLACE Motif

AtREG359 AAAGGCCC               PPDB Motif GCCCA PLACE Motif GGGCC

AtREG353   AAGGCCCA              PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG482    AGGCCCAC             PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG532      GCCCACTA           PPDB Motif GCCCA PLACE Motif

AtREG634           CTAAGCCC      PPDB Motif GCCCA PLACE Motif

AtREG426            TAAGCCCA     PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378             AAGCCCAT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG477              AGCCCATA   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG432               GCCCATAT PPDB Motif GCCCA PLACE Motif

AtREG620                CCCATATA PPDB Motif GCCCA PLACE Motif

REG AATAGCCCATCT - 2145844 2145855 AT3G06790.1, AT3G06790.2

AtREG584 AATAGCCC     PPDB Motif GCCCA PLACE Motif

AtREG581   TAGCCCAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG572     GCCCATCT PPDB Motif GCCCA PLACE Motif

REG GGCTTTTT + 2146220 2146227 AT3G06810.1

AtREG589 GGCTTTTT PPDB Motif PLACE Motif