Summary of Gene (AT3G06778.1)
|
Overview |
Genome position
from initiation codon AT3G06790.2 TSS from cDNA TSS information AT3G06778.1 5'->3' (-) Promoter sequence AT3G06810.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone peak | A | clone | - | 2141523 | -86 |
TSS clone peak | A | clone | - | 2141522 | -85 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | None | None | None |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 5 | + | 2146486 | AT3G06810.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone peak | G | clone | - | 2145776 | AT3G06790.1, AT3G06790.2 |
TSS clone peak | C | clone | - | 2145749 | AT3G06790.1, AT3G06790.2 |
TSS clone | A | clone | + | 2146336 | AT3G06810.1 |
TSS clone | T | clone | + | 2146462 | AT3G06810.1 |
TSS clone | T | clone | + | 2146480 | AT3G06810.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | CAAAGGCCCACTAAGCCCATATA | - | 2145808 | 2145830 | AT3G06790.1, AT3G06790.2 | ||||
AtREG656 | CAAAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG359 | AAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG353 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG482 | AGGCCCAC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG532 | GCCCACTA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG634 | CTAAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG426 | TAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG378 | AAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG477 | AGCCCATA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG432 | GCCCATAT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG620 | CCCATATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AATAGCCCATCT | - | 2145844 | 2145855 | AT3G06790.1, AT3G06790.2 | ||||
AtREG584 | AATAGCCC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG581 | TAGCCCAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG572 | GCCCATCT | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | GGCTTTTT | + | 2146220 | 2146227 | AT3G06810.1 | ||||
AtREG589 | GGCTTTTT | PPDB Motif |   | PLACE Motif |   |