PlantPromoterDB promoter information of AT3G06850
Summary of Gene (AT3G06850)
|
Overview
|
Focused view (chromosome 3: 2161465-2160266)
|
Genome position
from initiation codon AT3G06850.2 TSS from cDNA TSS information AT3G06850 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT3G06850
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 10 | - | 2160618 | -153 |
| TSS peak | A | 4 | - | 2160489 | -24 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 2160623 | -158 |
| TSS clone | G | clone | - | 2160618 | -153 |
| TSS clone | G | clone | - | 2160617 | -152 |
| TSS clone | C | clone | - | 2160613 | -148 |
| TSS clone | A | clone | - | 2160609 | -144 |
| TSS clone | A | clone | - | 2160543 | -78 |
| TSS clone | T | clone | - | 2160525 | -60 |
| TSS clone | C | clone | - | 2160488 | -23 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTTCTTCTCC | - | 2160512 | 2160521 | -47 | -56 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGCGTGT | - | 2160747 | 2160754 | -282 | -289 | |||
| AtREG536 | ACGCGTGT | ABA, Drought | PPDB Motif | PLACE Motif | ACACNNG | ||||
| REG | GGCTTTTT | - | 2160817 | 2160824 | -352 | -359 | |||
| AtREG589 | GGCTTTTT | PPDB Motif | PLACE Motif | ||||||
| REG | GGCCTTTT | - | 2160865 | 2160872 | -400 | -407 | |||
| AtREG459 | GGCCTTTT | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||