Summary of Gene (AT3G06850)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon AT3G06850.2 TSS from cDNA TSS information AT3G06850 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 10 | - | 2160618 | -153 |
TSS peak | A | 4 | - | 2160489 | -24 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 2160623 | -158 |
TSS clone | G | clone | - | 2160618 | -153 |
TSS clone | G | clone | - | 2160617 | -152 |
TSS clone | C | clone | - | 2160613 | -148 |
TSS clone | A | clone | - | 2160609 | -144 |
TSS clone | A | clone | - | 2160543 | -78 |
TSS clone | T | clone | - | 2160525 | -60 |
TSS clone | C | clone | - | 2160488 | -23 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTTCTTCTCC | - | 2160512 | 2160521 | -47 | -56 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACGCGTGT | - | 2160747 | 2160754 | -282 | -289 | |||
AtREG536 | ACGCGTGT | ABA, Drought | PPDB Motif |   | PLACE Motif | ACACNNG  | |||
REG | GGCTTTTT | - | 2160817 | 2160824 | -352 | -359 | |||
AtREG589 | GGCTTTTT | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGCCTTTT | - | 2160865 | 2160872 | -400 | -407 | |||
AtREG459 | GGCCTTTT | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |