PlantPromoterDB promoter information of AT3G07480.1

Summary of Gene (AT3G07480.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G07480 TAIR NCBI
Gene model	AT3G07480.1
Description	electron carrier/ iron-sulfur cluster binding; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; LOCATED IN: mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); Has 1153 Blast hits to 1153 proteins in 168 species: Archae - 0; Bacteria - 236; Metazoa - 115; Fungi - 5; Plants - 23; Viruses - 0; Other Eukaryotes - 774 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 2388026-2389225)

`Genome position from initiation codon` `TSS from cDNA TSS information AT3G07480.1 5'->3' (+) Promoter sequence AT3G07470.1 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G07480.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 8 + 2388990 -36

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	8	+	2388990	-36

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone + 2388981 -45

TSS clone T clone + 2388996 -30

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	+	2388981	-45
TSS clone	`T`	clone	+	2388996	-30

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG GACCGGTTCG + 2388854 2388863 -172 -163

AtREG552 GACCGGTT   PPDB Motif AACCG(G/A) PLACE Motif

AtREG528 ACCGGTTC PPDB Motif AACCG(G/A) PLACE Motif

AtREG423   CCGGTTCG PPDB Motif AACCG(G/A) PLACE Motif

REG ATTTGGGCTTG + 2388884 2388894 -142 -132

AtREG421 ATTTGGGC    PPDB Motif GCCCA PLACE Motif

AtREG469 TTTGGGCT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407   TTGGGCTT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG525    TGGGCTTG PPDB Motif GCCCA PLACE Motif TGGGCY

REG TTTGGGCTTAT + 2388912 2388922 -114 -104

AtREG469 TTTGGGCT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG407 TTGGGCTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG426   TGGGCTTA PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG462    GGGCTTAT PPDB Motif GCCCA PLACE Motif

REG GAAGCCCATCT + 2388926 2388936 -100 -90

AtREG476 GAAGCCCA    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378 AAGCCCAT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG572    GCCCATCT PPDB Motif GCCCA PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`GACCGGTTCG`		+	2388854	2388863	-172	-163
	AtREG552	`GACCGGTT`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG528	`ACCGGTTC`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
	AtREG423	`CCGGTTCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`ATTTGGGCTTG`		+	2388884	2388894	-142	-132
	AtREG421	`ATTTGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG469	`TTTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`TTGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG525	`TGGGCTTG`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
REG	`TTTGGGCTTAT`		+	2388912	2388922	-114	-104
	AtREG469	`TTTGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG407	`TTGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG426	`TGGGCTTA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG462	`GGGCTTAT`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`GAAGCCCATCT`		+	2388926	2388936	-100	-90
	AtREG476	`GAAGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`AAGCCCAT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG572	`GCCCATCT`		PPDB Motif	`GCCCA`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 5 - 2388398 AT3G07470.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	5	-	2388398	AT3G07470.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone T clone - 2388484 AT3G07470.1

TSS clone A clone - 2388479 AT3G07470.1

TSS clone T clone - 2388474 AT3G07470.1

TSS clone G clone - 2388396 AT3G07470.1

TSS clone A clone - 2388394 AT3G07470.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`T`	clone	-	2388484	AT3G07470.1
TSS clone	`A`	clone	-	2388479	AT3G07470.1
TSS clone	`T`	clone	-	2388474	AT3G07470.1
TSS clone	`G`	clone	-	2388396	AT3G07470.1
TSS clone	`A`	clone	-	2388394	AT3G07470.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTCCTTCTTCGTCTTCC - 2388431 2388448 AT3G07470.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTCCTTCTTCGTCTTCC`	-	2388431	2388448	AT3G07470.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG CGACGTGGCT - 2388587 2388596 AT3G07470.1

AtREG465 CGACGTGG PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG388 GACGTGGC PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG450 ACGTGGCT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC