Summary of Gene (AT3G07670.1)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT3G07670.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 8 | + | 2451612 | -39 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | G | clone | + | 2451610 | -41 |
TSS clone | T | clone | + | 2451634 | -17 |
TSS clone | T | clone | + | 2451637 | -14 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CGTCTTCT | + | 2451619 | 2451626 | -32 | -25 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ATAAACCGT | + | 2451337 | 2451345 | -314 | -306 | |||
AtREG598 | ATAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG652 | TAAACCGT | PPDB Motif |   | PLACE Motif |   | ||||
REG | GGCTTTTTCCCATTAG | + | 2451418 | 2451433 | -233 | -218 | |||
AtREG589 | GGCTTTTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG558 | CCCATTAG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | AAACCGAACCAAACCG | + | 2451520 | 2451535 | -131 | -116 | |||
AtREG568 | AAACCGAA | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG556 | AACCGAAC | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG451 | ACCGAACC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG655 | CCGAACCA | PPDB Motif |   | PLACE Motif |   | ||||
AtREG550 | CCAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |