PlantPromoterDB promoter information of AT3G07700

Summary of Gene (AT3G07700)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G07700 TAIR NCBI
Gene model	AT3G07700
Description	ABC1 family protein; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: ABC-1 (InterPro:IPR004147), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: ATATH13; transporter (TAIR:AT5G64940.2); Has 7549 Blast hits to 7505 proteins in 1104 species: Archae - 67; Bacteria - 2628; Metazoa - 384; Fungi - 314; Plants - 355; Viruses - 14; Other Eukaryotes - 3787 (source: NCBI BLink).

#

Overview

Focused view (chromosome 3: 2455391-2454192)

`Genome position from initiation codon` `TSS from cDNA TSS information AT3G07700 5'->3' (-) Promoter sequence AT3G07670.1 AT3G07680.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G07700

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak G 4 - 2463864 -623

TSS peak A 8 - 2463762 -521

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`G`	4	-	2463864	-623
TSS peak	`A`	8	-	2463762	-521

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone T clone - 2463846 -605

TSS clone G clone - 2463642 -401

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`T`	clone	-	2463846	-605
TSS clone	`G`	clone	-	2463642	-401

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CCTCTCTCTCTCTC - 2463791 2463804 -550 -563

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CCTCTCTCTCTCTC`	-	2463791	2463804	-550	-563
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG ACGACACC - 2463827 2463834 -586 -593

AtREG599 ACGACACC PPDB Motif PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`ACGACACC`		-	2463827	2463834	-586	-593
	AtREG599	`ACGACACC`		PPDB Motif		PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

TSS peak G 8 + 2455316 AT3G07680.1

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
TSS peak	`G`	8	+	2455316	AT3G07680.1

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone C clone + 2455290 AT3G07680.1

TSS clone G clone + 2455307 AT3G07680.1

TSS clone C clone + 2455331 AT3G07680.1

TSS clone G clone + 2455332 AT3G07680.1

TSS clone C clone + 2455339 AT3G07680.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`C`	clone	+	2455290	AT3G07680.1
TSS clone	`G`	clone	+	2455307	AT3G07680.1
TSS clone	`C`	clone	+	2455331	AT3G07680.1
TSS clone	`G`	clone	+	2455332	AT3G07680.1
TSS clone	`C`	clone	+	2455339	AT3G07680.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch CTCTTTCTC + 2455339 2455347 AT3G07680.1

Y Patch TTCTCTCC + 2455354 2455361 AT3G07680.1

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`CTCTTTCTC`	+	2455339	2455347	AT3G07680.1
Y Patch	`TTCTCTCC`	+	2455354	2455361	AT3G07680.1
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG ACACGTCAG + 2455018 2455026 AT3G07680.1

AtREG517 ACACGTCA ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG440 CACGTCAG ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG

REG ATGACGTGGCAAT + 2455149 2455161 AT3G07680.1

AtREG483 ATGACGTG      PPDB Motif ACGT PLACE Motif ACGT, ACGTG

AtREG419 TGACGTGG     PPDB Motif ACGT PLACE Motif ACGT, ACGTG, TGACGTGG, CCACGTCA

AtREG388   GACGTGGC    PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG379    ACGTGGCA   ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG452     CGTGGCAA PPDB Motif PLACE Motif GCCAC

AtREG654      GTGGCAAT PPDB Motif PLACE Motif GCCAC

REG ACGCCACGTA + 2455201 2455210 AT3G07680.1

AtREG508 ACGCCACG   PPDB Motif PLACE Motif GCCAC

AtREG371 CGCCACGT ABA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

AtREG413   GCCACGTA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, GCCAC, ACGTGKC

REG GACGTCGTTTA + 2455247 2455257 AT3G07680.1

AtREG431 GACGTCGT    PPDB Motif ACGT PLACE Motif ACGT

AtREG493 ACGTCGTT   PPDB Motif ACGT PLACE Motif ACGT

AtREG415   CGTCGTTT PPDB Motif PLACE Motif

AtREG565    GTCGTTTA PPDB Motif PLACE Motif