Summary of Gene (AT3G07700)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G07700 5'->3' (-) Promoter sequence AT3G07670.1
AT3G07680.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 4 | - | 2463864 | -623 |
TSS peak | A | 8 | - | 2463762 | -521 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 2463846 | -605 |
TSS clone | G | clone | - | 2463642 | -401 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCTCTCTCTCTC | - | 2463791 | 2463804 | -550 | -563 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACGACACC | - | 2463827 | 2463834 | -586 | -593 | |||
AtREG599 | ACGACACC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 8 | + | 2455316 | AT3G07680.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | C | clone | + | 2455290 | AT3G07680.1 |
TSS clone | G | clone | + | 2455307 | AT3G07680.1 |
TSS clone | C | clone | + | 2455331 | AT3G07680.1 |
TSS clone | G | clone | + | 2455332 | AT3G07680.1 |
TSS clone | C | clone | + | 2455339 | AT3G07680.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTTTCTC | + | 2455339 | 2455347 | AT3G07680.1 | |
Y Patch | TTCTCTCC | + | 2455354 | 2455361 | AT3G07680.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ACACGTCAG | + | 2455018 | 2455026 | AT3G07680.1 | ||||
AtREG517 | ACACGTCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
AtREG440 | CACGTCAG | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | |||
REG | ATGACGTGGCAAT | + | 2455149 | 2455161 | AT3G07680.1 | ||||
AtREG483 | ATGACGTG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG  | ||||
AtREG419 | TGACGTGG | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, TGACGTGG, CCACGTCA  | ||||
AtREG388 | GACGTGGC | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
AtREG379 | ACGTGGCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG452 | CGTGGCAA | PPDB Motif |   | PLACE Motif | GCCAC  | ||||
AtREG654 | GTGGCAAT | PPDB Motif |   | PLACE Motif | GCCAC  | ||||
REG | ACGCCACGTA | + | 2455201 | 2455210 | AT3G07680.1 | ||||
AtREG508 | ACGCCACG | PPDB Motif |   | PLACE Motif | GCCAC  | ||||
AtREG371 | CGCCACGT | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | |||
AtREG413 | GCCACGTA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, GCCAC, ACGTGKC  | ||||
REG | GACGTCGTTTA | + | 2455247 | 2455257 | AT3G07680.1 | ||||
AtREG431 | GACGTCGT | PPDB Motif | ACGT  | PLACE Motif | ACGT  | ||||
AtREG493 | ACGTCGTT | PPDB Motif | ACGT  | PLACE Motif | ACGT  | ||||
AtREG415 | CGTCGTTT | PPDB Motif |   | PLACE Motif |   | ||||
AtREG565 | GTCGTTTA | PPDB Motif |   | PLACE Motif |   |