Summary of Gene (AT3G07700)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G07700 5'->3' (-) Promoter sequence AT3G07680.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 4 | - | 2463864 | -623 |
TSS peak | A | 8 | - | 2463762 | -521 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | T | clone | - | 2463846 | -605 |
TSS clone | G | clone | - | 2463642 | -401 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CCTCTCTCTCTCTC | - | 2463791 | 2463804 | -550 | -563 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | ACGACACC | - | 2463827 | 2463834 | -586 | -593 | |||
AtREG599 | ACGACACC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GACGTGTCA | + | 2456935 | 2456943 | AT3G07690.1 | ||||
AtREG481 | GACGTGTC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
AtREG389 | ACGTGTCA | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC  | |||
REG | AGTTGGGCCCA | + | 2457018 | 2457028 | AT3G07690.1 | ||||
AtREG607 | AGTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG449 | GTTGGGCC | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG392 | TTGGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG422 | TGGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  |