Summary of Gene (AT3G07740.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G07740.1 5'->3' (-) Promoter sequence AT3G07720.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | - | 2473095 | -33 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 2473095 | -33 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCGACTTA | - | 2473147 | 2473154 | -85 | -92 | |||
AtREG582 | CCGACTTA | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
REG | TAAGGGTA | - | 2473168 | 2473175 | -106 | -113 | |||
AtREG570 | TAAGGGTA | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
REG | TTTCCGGT | - | 2473280 | 2473287 | -218 | -225 | |||
AtREG644 | TTTCCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 2 | + | 2465373 | AT3G07720.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | + | 2465375 | AT3G07720.1 |
TSS clone | A | clone | + | 2465376 | AT3G07720.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TTCCCTCTCTTT | + | 2465326 | 2465337 | AT3G07720.1 | |
Y Patch | TCTCCTTC | + | 2465406 | 2465413 | AT3G07720.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | TGCCGTTTT | + | 2465189 | 2465197 | AT3G07720.1 | ||||
AtREG500 | TGCCGTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG531 | GCCGTTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   |