Summary of Gene (AT3G07740.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G07740.1 5'->3' (-) Promoter sequence AT3G07750.1
AT3G07750.2 AT3G07760.1 AT3G07760.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | - | 2473095 | -33 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 2473095 | -33 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCGACTTA | - | 2473147 | 2473154 | -85 | -92 | |||
AtREG582 | CCGACTTA | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
REG | TAAGGGTA | - | 2473168 | 2473175 | -106 | -113 | |||
AtREG570 | TAAGGGTA | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
REG | TTTCCGGT | - | 2473280 | 2473287 | -218 | -225 | |||
AtREG644 | TTTCCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 8 | + | 2476483 | AT3G07760.1, AT3G07760.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 2476405 | AT3G07760.1, AT3G07760.2 |
TSS clone | A | clone | + | 2476444 | AT3G07760.1, AT3G07760.2 |
TSS clone | A | clone | + | 2476452 | AT3G07760.1, AT3G07760.2 |
TSS clone | C | clone | + | 2476484 | AT3G07760.1, AT3G07760.2 |
TSS clone | A | clone | + | 2476487 | AT3G07760.1, AT3G07760.2 |
TSS clone | T | clone | + | 2476508 | AT3G07760.1, AT3G07760.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTCTCTTC | + | 2476434 | 2476443 | AT3G07760.1, AT3G07760.2 | |
Y Patch | CTCTTCCTCT | + | 2476497 | 2476506 | AT3G07760.1, AT3G07760.2 | |
Y Patch | TCTCTCTCCC | + | 2476508 | 2476517 | AT3G07760.1, AT3G07760.2 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GGCGCGTG | + | 2476303 | 2476310 | AT3G07760.1, AT3G07760.2 | ||||
AtREG486 | GGCGCGTG | PPDB Motif | ACGCGC  | PLACE Motif |   |