PlantPromoterDB promoter information of AT3G07740.3
Summary of Gene (AT3G07740.3)
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Overview
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Focused view (chromosome 3: 2466285-2465086)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G07740.3 5'->3' (-) Promoter sequence AT3G07720.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G07740.3
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | - | 2473095 | -460 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | - | 2473095 | -460 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CCGACTTA | - | 2473147 | 2473154 | -512 | -519 | |||
| AtREG582 | CCGACTTA | PPDB Motif | CCGAC | PLACE Motif | CCGAC | ||||
| REG | TAAGGGTA | - | 2473168 | 2473175 | -533 | -540 | |||
| AtREG570 | TAAGGGTA | PPDB Motif | ACCCT | PLACE Motif | |||||
| REG | TTTCCGGT | - | 2473280 | 2473287 | -645 | -652 | |||
| AtREG644 | TTTCCGGT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | G | 2 | + | 2465373 | AT3G07720.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | G | clone | + | 2465375 | AT3G07720.1 |
| TSS clone | A | clone | + | 2465376 | AT3G07720.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTCCCTCTCTTT | + | 2465326 | 2465337 | AT3G07720.1 | |
| Y Patch | TCTCCTTC | + | 2465406 | 2465413 | AT3G07720.1 | |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | TGCCGTTTT | + | 2465189 | 2465197 | AT3G07720.1 | ||||
| AtREG500 | TGCCGTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| AtREG531 | GCCGTTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||