Summary of Gene (AT3G07740.3)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G07740.3 5'->3' (-) Promoter sequence AT3G07770.1
AT3G07780.1 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | - | 2473095 | -460 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 2473095 | -460 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CCGACTTA | - | 2473147 | 2473154 | -512 | -519 | |||
AtREG582 | CCGACTTA | PPDB Motif | CCGAC  | PLACE Motif | CCGAC  | ||||
REG | TAAGGGTA | - | 2473168 | 2473175 | -533 | -540 | |||
AtREG570 | TAAGGGTA | PPDB Motif | ACCCT  | PLACE Motif |   | ||||
REG | TTTCCGGT | - | 2473280 | 2473287 | -645 | -652 | |||
AtREG644 | TTTCCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | G | 4 | + | 2484470 | AT3G07780.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | T | clone | + | 2484469 | AT3G07780.1 |
TSS clone | G | clone | + | 2484470 | AT3G07780.1 |
TSS clone | T | clone | + | 2484471 | AT3G07780.1 |
TSS clone | A | clone | + | 2484475 | AT3G07780.1 |
TSS clone | A | clone | + | 2484479 | AT3G07780.1 |
TSS clone | T | clone | + | 2484480 | AT3G07780.1 |
TSS clone | A | clone | + | 2484507 | AT3G07780.1 |
TSS clone | C | clone | + | 2484508 | AT3G07780.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTTCCT | + | 2484480 | 2484487 | AT3G07780.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ACGCGTTT | + | 2484350 | 2484357 | AT3G07780.1 | ||||
AtREG633 | ACGCGTTT | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
REG | AAAGTCAA | + | 2484361 | 2484368 | AT3G07780.1 | ||||
AtREG632 | AAAGTCAA | PPDB Motif |   | PLACE Motif | TTGAC  | ||||
REG | ACCGTTAG | + | 2484401 | 2484408 | AT3G07780.1 | ||||
AtREG603 | ACCGTTAG | PPDB Motif |   | PLACE Motif | YAACKG, CNGTTR  |