PlantPromoterDB promoter information of AT3G07780.1
Summary of Gene (AT3G07780.1)
|
Overview
|
Focused view (chromosome 3: 2484104-2485303)
|
Genome position
from initiation codon TSS from cDNA TSS information AT3G07780.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
|
|
|
|
Promoter Summary of AT3G07780.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 4 | + | 2484470 | -634 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 2484469 | -635 |
| TSS clone | G | clone | + | 2484470 | -634 |
| TSS clone | T | clone | + | 2484471 | -633 |
| TSS clone | A | clone | + | 2484475 | -629 |
| TSS clone | A | clone | + | 2484479 | -625 |
| TSS clone | T | clone | + | 2484480 | -624 |
| TSS clone | A | clone | + | 2484507 | -597 |
| TSS clone | C | clone | + | 2484508 | -596 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TCTTTCCT | + | 2484480 | 2484487 | -624 | -617 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGCGTTT | + | 2484350 | 2484357 | -754 | -747 | |||
| AtREG633 | ACGCGTTT | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
| REG | AAAGTCAA | + | 2484361 | 2484368 | -743 | -736 | |||
| AtREG632 | AAAGTCAA | PPDB Motif | PLACE Motif | TTGAC | |||||
| REG | ACCGTTAG | + | 2484401 | 2484408 | -703 | -696 | |||
| AtREG603 | ACCGTTAG | PPDB Motif | PLACE Motif | YAACKG, CNGTTR | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||