Summary of Gene (AT3G07820)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G07820 5'->3' (-) Promoter sequence AT3G07810.1
AT3G07810.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 2498095 | -67 |
TSS clone peak | G | clone | - | 2498094 | -66 |
TSS clone | A | clone | - | 2498093 | -65 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | GCACTATATAAAGG | - | 2498120 | 2498133 | -92 | -105 |
Y Patch | TCTCTCCTCC | - | 2498141 | 2498150 | -113 | -122 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GGGTCAAA | - | 2498203 | 2498210 | -175 | -182 | |||
AtREG592 | GGGTCAAA | PPDB Motif |   | PLACE Motif | TTGAC, TTGACC  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |