PlantPromoterDB promoter information of AT3G08030

Summary of Gene (AT3G08030)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G08030 TAIR NCBI
Gene model	AT3G08030
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41800.1); Has 178 Blast hits to 157 proteins in 12 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 176; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 2563191-2564390)

`Genome position from initiation codon` `AT3G08030.1 AT3G08030.2 TSS from cDNA TSS information AT3G08030 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G08030

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 13 + 2564111 -80

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	13	+	2564111	-80

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone + 2564083 -108

TSS clone C clone + 2564103 -88

TSS clone T clone + 2564104 -87

TSS clone C clone + 2564105 -86

TSS clone T clone + 2564106 -85

TSS clone C clone + 2564107 -84

TSS clone A clone + 2564110 -81

TSS clone A clone + 2564111 -80

TSS clone T clone + 2564112 -79

TSS clone T clone + 2564114 -77

TSS clone A clone + 2564117 -74

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	+	2564083	-108
TSS clone	`C`	clone	+	2564103	-88
TSS clone	`T`	clone	+	2564104	-87
TSS clone	`C`	clone	+	2564105	-86
TSS clone	`T`	clone	+	2564106	-85
TSS clone	`C`	clone	+	2564107	-84
TSS clone	`A`	clone	+	2564110	-81
TSS clone	`A`	clone	+	2564111	-80
TSS clone	`T`	clone	+	2564112	-79
TSS clone	`T`	clone	+	2564114	-77
TSS clone	`A`	clone	+	2564117	-74

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box TGTATAAA + 2564070 2564077 -121 -114

Y Patch CGTCTTCCTCTC + 2564096 2564107 -95 -84

Y Patch TTTCTCTCTCCC + 2564131 2564142 -60 -49

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	`TGTATAAA`	+	2564070	2564077	-121	-114
Y Patch	`CGTCTTCCTCTC`	+	2564096	2564107	-95	-84
Y Patch	`TTTCTCTCTCCC`	+	2564131	2564142	-60	-49
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG AAAAGGCC + 2563876 2563883 -315 -308

AtREG459 AAAAGGCC PPDB Motif PLACE Motif

REG AGTCGGTT + 2563958 2563965 -233 -226

AtREG641 AGTCGGTT PPDB Motif AACCG(G/A), CCGAC PLACE Motif CCGAC, RCCGAC

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`AAAAGGCC`		+	2563876	2563883	-315	-308
	AtREG459	`AAAAGGCC`		PPDB Motif		PLACE Motif
REG	`AGTCGGTT`		+	2563958	2563965	-233	-226
	AtREG641	`AGTCGGTT`		PPDB Motif	`AACCG(G/A), CCGAC`	PLACE Motif	`CCGAC, RCCGAC`

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG None None None