PlantPromoterDB promoter information of AT3G08580
Summary of Gene (AT3G08580)
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Overview
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Focused view (chromosome 3: 2608030-2606831)
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Genome position
from initiation codon AT3G08580.2 TSS from cDNA TSS information AT3G08580 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G08580
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 105 | - | 2607746 | -716 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 2607749 | -719 |
| TSS clone | C | clone | - | 2607747 | -717 |
| TSS clone | G | clone | - | 2607746 | -716 |
| TSS clone | C | clone | - | 2607745 | -715 |
| TSS clone | T | clone | - | 2607743 | -713 |
| TSS clone | A | clone | - | 2607738 | -708 |
| TSS clone | A | clone | - | 2607735 | -705 |
| TSS clone | C | clone | - | 2607734 | -704 |
| TSS clone | T | clone | - | 2607720 | -690 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | CGTCTCTCTTCTCT | - | 2607709 | 2607722 | -679 | -692 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | CAAGGCCCAAAT | - | 2607859 | 2607870 | -829 | -840 | |||
| AtREG398 | CAAGGCCC | PPDB Motif | GCCCA | PLACE Motif | GGGCC | ||||
| AtREG353 | AAGGCCCA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG356 | AGGCCCAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG373 | GGCCCAAA | PPDB Motif | GCCCA | PLACE Motif | GGGCC, TGGGCY | ||||
| AtREG421 | GCCCAAAT | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | ATCCAACGG | - | 2607882 | 2607890 | -852 | -860 | |||
| AtREG586 | ATCCAACG | PPDB Motif | CCAACGG | PLACE Motif | |||||
| AtREG554 | TCCAACGG | PPDB Motif | CCAACGG | PLACE Motif | YAACKG, CNGTTR | ||||
| REG | CTAACGGT | - | 2607986 | 2607993 | -956 | -963 | |||
| AtREG603 | CTAACGGT | PPDB Motif | PLACE Motif | YAACKG, CNGTTR | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||