PlantPromoterDB promoter information of AT3G08720
Summary of Gene (AT3G08720)
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Overview
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Focused view (chromosome 3: 2651407-2650208)
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Genome position
from initiation codon AT3G08720.2 TSS from cDNA TSS information AT3G08720 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G08720
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone peak | G | clone | - | 2651160 | -753 |
| TSS clone peak | A | clone | - | 2650985 | -578 |
| TSS clone peak | T | clone | - | 2650843 | -436 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | GATATAAATT | - | 2651009 | 2651018 | -602 | -611 |
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACGACACG | - | 2650995 | 2651002 | -588 | -595 | |||
| AtREG428 | ACGACACG | ABA, DREB1Aox, Ethylene, Drought | PPDB Motif | PLACE Motif | |||||
| REG | TTGACTTT | - | 2651052 | 2651059 | -645 | -652 | |||
| AtREG632 | TTGACTTT | PPDB Motif | PLACE Motif | TTGAC | |||||
| REG | CACGCGCC | - | 2651184 | 2651191 | -777 | -784 | |||
| AtREG486 | CACGCGCC | PPDB Motif | ACGCGC | PLACE Motif | |||||
| REG | AACACGTGTCC | - | 2651237 | 2651247 | -830 | -840 | |||
| AtREG590 | AACACGTG | ABA, JA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACACNNG | |||
| AtREG366 | CACGTGTC | ABA | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, CACGTG, ACGTGKC, ACACNNG, ACGTGTC | |||
| AtREG472 | ACGTGTCC | ABA, DREB1Aox, Drought | PPDB Motif | ACGT | PLACE Motif | ACGT, ACGTG, ACGTGKC, ACGTGTC | |||
| REG | GTTCGGTTTCCCAATAG | - | 2651254 | 2651270 | -847 | -863 | |||
| AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG624 | CCCAATAG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | GCCCACTA | - | 2651284 | 2651291 | -877 | -884 | |||
| AtREG532 | GCCCACTA | PPDB Motif | GCCCA | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||