PlantPromoterDB promoter information of AT3G08940
Summary of Gene (AT3G08940)
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Overview
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Focused view (chromosome 3: 2716717-2717916)
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Genome position
from initiation codon AT3G08940.1 AT3G08940.2 TSS from cDNA TSS information AT3G08940 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G08940
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | G | 277 | + | 2717683 | -34 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 2717676 | -41 |
| TSS clone | C | clone | + | 2717677 | -40 |
| TSS clone | A | clone | + | 2717678 | -39 |
| TSS clone | A | clone | + | 2717679 | -38 |
| TSS clone | C | clone | + | 2717681 | -36 |
| TSS clone | G | clone | + | 2717683 | -34 |
| TSS clone | C | clone | + | 2717684 | -33 |
| TSS clone | A | clone | + | 2717700 | -17 |
| TSS clone | A | clone | + | 2717701 | -16 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | ACCGTCAGA | + | 2717570 | 2717578 | -147 | -139 | |||
| AtREG625 | ACCGTCAG | PPDB Motif | PLACE Motif | ||||||
| AtREG622 | CCGTCAGA | PPDB Motif | PLACE Motif | ||||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||