Summary of Gene (AT3G09370.1)
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Overview |
Genome position
from initiation codon AT3G09370.2 TSS from cDNA TSS information AT3G09370.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 4 | + | 2879345 | -189 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | + | 2879367 | -167 |
TSS clone | T | clone | + | 2879368 | -166 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTTCGGTTTGG | + | 2879234 | 2879244 | -300 | -290 | |||
AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG550 | CGGTTTGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | ACGTCAGC | + | 2879291 | 2879298 | -243 | -236 | |||
AtREG515 | ACGTCAGC | SA | PPDB Motif | ACGT  | PLACE Motif | ACGT  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | None | None | None |