Summary of Gene (AT3G09390)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G09390 5'->3' (-) Promoter sequence AT3G09350.1
AT3G09350.2 AT3G09350.3 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 44 | - | 2890224 | -36 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | - | 2890229 | -41 |
TSS clone | A | clone | - | 2890228 | -40 |
TSS clone | T | clone | - | 2890227 | -39 |
TSS clone | T | clone | - | 2890223 | -35 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTTATAAATT | - | 2890256 | 2890265 | -68 | -77 |
Y Patch | CTTCCTCT | - | 2890242 | 2890249 | -54 | -61 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTGAACCG | - | 2890377 | 2890384 | -189 | -196 | |||
AtREG640 | TTGAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 5 | + | 2871141 | AT3G09350.1, AT3G09350.2, AT3G09350.3 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | C | clone | + | 2871127 | AT3G09350.1, AT3G09350.2, AT3G09350.3 |
TSS clone | T | clone | + | 2871128 | AT3G09350.1, AT3G09350.2, AT3G09350.3 |
TSS clone | A | clone | + | 2871133 | AT3G09350.1, AT3G09350.2, AT3G09350.3 |
TSS clone | T | clone | + | 2871134 | AT3G09350.1, AT3G09350.2, AT3G09350.3 |
TSS clone | T | clone | + | 2871181 | AT3G09350.1, AT3G09350.2, AT3G09350.3 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CTCTTCCTCT | + | 2871121 | 2871130 | AT3G09350.1, AT3G09350.2, AT3G09350.3 | |
Y Patch | TTTCTTCTTCT | + | 2871169 | 2871179 | AT3G09350.1, AT3G09350.2, AT3G09350.3 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | AAAGTCAA | + | 2870847 | 2870854 | AT3G09350.1, AT3G09350.2, AT3G09350.3 | ||||
AtREG632 | AAAGTCAA | PPDB Motif |   | PLACE Motif | TTGAC  | ||||
REG | CGTGGCAT | + | 2870865 | 2870872 | AT3G09350.1, AT3G09350.2, AT3G09350.3 | ||||
AtREG448 | CGTGGCAT | ABA, DREB1Aox | PPDB Motif |   | PLACE Motif | GCCAC  | |||
REG | TAAGCCCAATAA | + | 2870933 | 2870944 | AT3G09350.1, AT3G09350.2, AT3G09350.3 | ||||
AtREG426 | TAAGCCCA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | AAGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG402 | AGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG355 | GCCCAATA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG417 | CCCAATAA | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ATTTGGGCTTG | + | 2870954 | 2870964 | AT3G09350.1, AT3G09350.2, AT3G09350.3 | ||||
AtREG421 | ATTTGGGC | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
AtREG469 | TTTGGGCT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG407 | TTGGGCTT | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
AtREG525 | TGGGCTTG | PPDB Motif | GCCCA  | PLACE Motif | TGGGCY  | ||||
REG | TTAAAGGCCCAATT | + | 2870969 | 2870982 | AT3G09350.1, AT3G09350.2, AT3G09350.3 | ||||
AtREG639 | TTAAAGGC | PPDB Motif | AAACG(C/G)  | PLACE Motif |   | ||||
AtREG467 | TAAAGGCC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG359 | AAAGGCCC | PPDB Motif | GCCCA  | PLACE Motif | GGGCC  | ||||
AtREG353 | AAGGCCCA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG356 | AGGCCCAA | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG352 | GGCCCAAT | PPDB Motif | GCCCA  | PLACE Motif | GGGCC, TGGGCY  | ||||
AtREG418 | GCCCAATT | PPDB Motif | GCCCA  | PLACE Motif |   |