PlantPromoterDB promoter information of AT3G09390.1
Summary of Gene (AT3G09390.1)
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Overview
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Focused view (chromosome 3: 2879738-2878539)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G09390.1 5'->3' (-) Promoter sequence AT3G09360.1
AT3G09370.1 AT3G09370.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G09390.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 44 | - | 2890224 | -36 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | C | clone | - | 2890229 | -41 |
| TSS clone | A | clone | - | 2890228 | -40 |
| TSS clone | T | clone | - | 2890227 | -39 |
| TSS clone | T | clone | - | 2890223 | -35 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | CTTATAAATT | - | 2890256 | 2890265 | -68 | -77 |
| Y Patch | CTTCCTCT | - | 2890242 | 2890249 | -54 | -61 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TTGAACCG | - | 2890377 | 2890384 | -189 | -196 | |||
| AtREG640 | TTGAACCG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 4 | + | 2879345 | AT3G09370.1, AT3G09370.2 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | + | 2879367 | AT3G09370.1, AT3G09370.2 |
| TSS clone | T | clone | + | 2879368 | AT3G09370.1, AT3G09370.2 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | GTTCGGTTTGG | + | 2879234 | 2879244 | AT3G09370.1, AT3G09370.2 | ||||
| AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| AtREG550 | CGGTTTGG | PPDB Motif | AACCG(G/A) | PLACE Motif | |||||
| REG | ACGTCAGC | + | 2879291 | 2879298 | AT3G09370.1, AT3G09370.2 | ||||
| AtREG515 | ACGTCAGC | SA | PPDB Motif | ACGT | PLACE Motif | ACGT | |||