Summary of Gene (AT3G09390.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G09390.1 5'->3' (-) Promoter sequence AT3G09370.1
AT3G09370.2 TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | A | 44 | - | 2890224 | -36 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | - | 2890229 | -41 |
TSS clone | A | clone | - | 2890228 | -40 |
TSS clone | T | clone | - | 2890227 | -39 |
TSS clone | T | clone | - | 2890223 | -35 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | CTTATAAATT | - | 2890256 | 2890265 | -68 | -77 |
Y Patch | CTTCCTCT | - | 2890242 | 2890249 | -54 | -61 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | TTGAACCG | - | 2890377 | 2890384 | -189 | -196 | |||
AtREG640 | TTGAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 4 | + | 2879345 | AT3G09370.1, AT3G09370.2 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | A | clone | + | 2879367 | AT3G09370.1, AT3G09370.2 |
TSS clone | T | clone | + | 2879368 | AT3G09370.1, AT3G09370.2 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | GTTCGGTTTGG | + | 2879234 | 2879244 | AT3G09370.1, AT3G09370.2 | ||||
AtREG556 | GTTCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG568 | TTCGGTTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG550 | CGGTTTGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | ACGTCAGC | + | 2879291 | 2879298 | AT3G09370.1, AT3G09370.2 | ||||
AtREG515 | ACGTCAGC | SA | PPDB Motif | ACGT  | PLACE Motif | ACGT  |