Summary of Gene (AT3G09410.1)
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Overview |
Genome position
from initiation codon TSS from cDNA TSS information AT3G09410.1 5'->3' (-) Promoter sequence TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
Not Available | Not Available | Not Available | Not Available | Not Available |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | A | clone | - | 2901019 | -35 |
TSS clone peak | T | clone | - | 2901014 | -30 |
TSS clone | A | clone | - | 2901006 | -22 |
TSS clone | T | clone | - | 2901005 | -21 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | TCTTCTTC | - | 2900986 | 2900993 | -2 | -9 |
Y Patch | TTCTTCTTCT | - | 2900996 | 2901005 | -12 | -21 |
Y Patch | TCTCTTCCT | - | 2901010 | 2901018 | -26 | -34 |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | GTTGGGCT | - | 2901076 | 2901083 | -92 | -99 | |||
AtREG574 | GTTGGGCT | PPDB Motif | GCCCA, CCAACGG  | PLACE Motif | TGGGCY  | ||||
REG | TTAAACCGGT | - | 2901116 | 2901125 | -132 | -141 | |||
AtREG473 | TTAAACCG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG412 | TAAACCGG | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG436 | AAACCGGT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
REG | TTCCGGTTAAA | - | 2901147 | 2901157 | -163 | -173 | |||
AtREG534 | TTCCGGTT | PPDB Motif | AACCG(G/A)  | PLACE Motif |   | ||||
AtREG621 | TCCGGTTA | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG501 | CCGGTTAA | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
AtREG645 | CGGTTAAA | PPDB Motif | AACCG(G/A)  | PLACE Motif | CNGTTR  | ||||
REG | TAATTGGG | - | 2901195 | 2901202 | -211 | -218 | |||
AtREG600 | TAATTGGG | PPDB Motif | GCCCA  | PLACE Motif |   | ||||
REG | ACGACGCC | - | 2901282 | 2901289 | -298 | -305 | |||
AtREG537 | ACGACGCC | PPDB Motif |   | PLACE Motif |   |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 13 | - | 2905710 | AT3G09440.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | G | clone | - | 2905724 | AT3G09440.1 |
TSS clone | G | clone | - | 2905723 | AT3G09440.1 |
TSS clone | G | clone | - | 2905716 | AT3G09440.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | TATATAGA | - | 2905748 | 2905755 | AT3G09440.1 | |
Y Patch | CCTCTTTC | - | 2905680 | 2905687 | AT3G09440.1 | |
Y Patch | CTTCTCCTTC | - | 2905738 | 2905747 | AT3G09440.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ACCGTCAGA | - | 2905826 | 2905834 | AT3G09440.1 | ||||
AtREG625 | ACCGTCAG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG622 | CCGTCAGA | PPDB Motif |   | PLACE Motif |   |