PlantPromoterDB promoter information of AT3G09430.1

Summary of Gene (AT3G09430.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G09430 TAIR NCBI
Gene model	AT3G09430.1
Description	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 8 Blast hits to 8 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 2900280-2901479)

`Genome position from initiation codon` `TSS from cDNA TSS information AT3G09430.1 5'->3' (+) Promoter sequence AT3G09410.1 AT3G09410.3 TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G09430.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG None None None

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	None	None	None

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

TSS clone A clone - 2901019 AT3G09410.3, AT3G09410.1

TSS clone peak T clone - 2901014 AT3G09410.3, AT3G09410.1

TSS clone A clone - 2901006 AT3G09410.3, AT3G09410.1

TSS clone T clone - 2901005 AT3G09410.3, AT3G09410.1

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
TSS clone	`A`	clone	-	2901019	AT3G09410.3, AT3G09410.1
TSS clone peak	`T`	clone	-	2901014	AT3G09410.3, AT3G09410.1
TSS clone	`A`	clone	-	2901006	AT3G09410.3, AT3G09410.1
TSS clone	`T`	clone	-	2901005	AT3G09410.3, AT3G09410.1

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TCTTCTTC - 2900986 2900993 AT3G09410.1, AT3G09410.3

Y Patch TTCTTCTTCT - 2900996 2901005 AT3G09410.1, AT3G09410.3

Y Patch TCTCTTCCT - 2901010 2901018 AT3G09410.1, AT3G09410.3

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TCTTCTTC`	-	2900986	2900993	AT3G09410.1, AT3G09410.3
Y Patch	`TTCTTCTTCT`	-	2900996	2901005	AT3G09410.1, AT3G09410.3
Y Patch	`TCTCTTCCT`	-	2901010	2901018	AT3G09410.1, AT3G09410.3
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG GTTGGGCT - 2901076 2901083 AT3G09410.1, AT3G09410.3

AtREG574 GTTGGGCT PPDB Motif GCCCA, CCAACGG PLACE Motif TGGGCY

REG TTAAACCGGT - 2901116 2901125 AT3G09410.1, AT3G09410.3

AtREG473 TTAAACCG   PPDB Motif AACCG(G/A) PLACE Motif

AtREG412 TAAACCGG PPDB Motif AACCG(G/A) PLACE Motif

AtREG436   AAACCGGT PPDB Motif AACCG(G/A) PLACE Motif

REG TTCCGGTTAAA - 2901147 2901157 AT3G09410.1, AT3G09410.3

AtREG534 TTCCGGTT    PPDB Motif AACCG(G/A) PLACE Motif

AtREG621 TCCGGTTA   PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG501   CCGGTTAA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

AtREG645    CGGTTAAA PPDB Motif AACCG(G/A) PLACE Motif CNGTTR

REG TAATTGGG - 2901195 2901202 AT3G09410.1, AT3G09410.3

AtREG600 TAATTGGG PPDB Motif GCCCA PLACE Motif

REG ACGACGCC - 2901282 2901289 AT3G09410.1, AT3G09410.3

AtREG537 ACGACGCC PPDB Motif PLACE Motif