PlantPromoterDB promoter information of AT3G09570.1

Summary of Gene (AT3G09570.1)

Organism	Arabidopsis thaliana
Chromosome	3
Locus	AT3G09570 TAIR NCBI
Gene model	AT3G09570.1
Description	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transmembrane receptor, eukaryota (InterPro:IPR009637); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18520.1); Has 385 Blast hits to 385 proteins in 83 species: Archae - 0; Bacteria - 2; Metazoa - 216; Fungi - 12; Plants - 132; Viruses - 0; Other Eukaryotes - 23 (source: NCBI BLink).

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Overview

Focused view (chromosome 3: 2939524-2940723)

`Genome position from initiation codon` `TSS from cDNA TSS information AT3G09570.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+) TSS tag distribution(-)`	Your web browser cannot display this window!

ATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGCATGC

Promoter Summary of AT3G09570.1

TSS information

Type Sequence TPM score Genome position Position from initiation codon

Strand Position Position

TSS peak A 8 + 2940455 -69

TSS peak G 8 + 2940491 -33

Type	Sequence	TPM score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS peak	`A`	8	+	2940455	-69
TSS peak	`G`	8	+	2940491	-33

TSS information from cDNA

Type Sequence Score Genome position Position from initiation codon

Strand Position Position

TSS clone A clone + 2940455 -69

TSS clone T clone + 2940492 -32

Type	Sequence	Score	Genome position	Position from initiation codon
			Strand	Position	Position
TSS clone	`A`	clone	+	2940455	-69
TSS clone	`T`	clone	+	2940492	-32

Core promoter information

Type Sequence Genome position Position from initiation codon

Strand Start End Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch TTCTTCCTTC + 2940439 2940448 -85 -76

GA None None None

Inr None None None

Type	Sequence	Genome position	Position from initiation codon
		Strand	Start	End	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	`TTCTTCCTTC`	+	2940439	2940448	-85	-76
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Position from initiation codon

Strand Start End Start End

REG CGCACGTGTT + 2940228 2940237 -296 -287

AtREG541 CGCACGTG   PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG

AtREG590   CACGTGTT ABA, JA PPDB Motif ACGT PLACE Motif ACGT, ACGTG, CACGTG, ACACNNG

REG CCAAACCG + 2940264 2940271 -260 -253

AtREG550 CCAAACCG PPDB Motif AACCG(G/A) PLACE Motif

REG ATTAGGCCCAATGGGCTTTG + 2940311 2940330 -213 -194

AtREG506 ATTAGGCC             PPDB Motif PLACE Motif

AtREG360 TTAGGCCC            PPDB Motif GCCCA PLACE Motif GGGCC

AtREG358   TAGGCCCA           PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG356    AGGCCCAA          PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG352     GGCCCAAT         PPDB Motif GCCCA PLACE Motif GGGCC, TGGGCY

AtREG461      GCCCAATG        PPDB Motif GCCCA PLACE Motif

AtREG551         CAATGGGC     PPDB Motif GCCCA PLACE Motif

AtREG372          AATGGGCT    PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG378           ATGGGCTT   PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG376            TGGGCTTT PPDB Motif GCCCA PLACE Motif TGGGCY

AtREG559             GGGCTTTG PPDB Motif GCCCA PLACE Motif

REG ACGGCGTCGTTTC + 2940386 2940398 -138 -126

AtREG540 ACGGCGTC      PPDB Motif PLACE Motif

AtREG537   GGCGTCGT    PPDB Motif PLACE Motif

AtREG439    GCGTCGTT   PPDB Motif PLACE Motif

AtREG415     CGTCGTTT PPDB Motif PLACE Motif

AtREG576      GTCGTTTC PPDB Motif PLACE Motif

REG TCAAAACGCC + 2940421 2940430 -103 -94

AtREG653 TCAAAACG   PPDB Motif AAACG(C/G) PLACE Motif

AtREG585 CAAAACGC PPDB Motif AAACG(C/G) PLACE Motif CAAAACGC

AtREG650   AAAACGCC PPDB Motif AAACG(C/G) PLACE Motif

Type	Sequence	Annotation	Genome position	Position from initiation codon
			Strand	Start	End	Start	End
REG	`CGCACGTGTT`		+	2940228	2940237	-296	-287
	AtREG541	`CGCACGTG`		PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG`
	AtREG590	`CACGTGTT`	ABA, JA	PPDB Motif	`ACGT`	PLACE Motif	`ACGT, ACGTG, CACGTG, ACACNNG`
REG	`CCAAACCG`		+	2940264	2940271	-260	-253
	AtREG550	`CCAAACCG`		PPDB Motif	`AACCG(G/A)`	PLACE Motif
REG	`ATTAGGCCCAATGGGCTTTG`		+	2940311	2940330	-213	-194
	AtREG506	`ATTAGGCC`		PPDB Motif		PLACE Motif
	AtREG360	`TTAGGCCC`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC`
	AtREG358	`TAGGCCCA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG356	`AGGCCCAA`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG352	`GGCCCAAT`		PPDB Motif	`GCCCA`	PLACE Motif	`GGGCC, TGGGCY`
	AtREG461	`GCCCAATG`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG551	`CAATGGGC`		PPDB Motif	`GCCCA`	PLACE Motif
	AtREG372	`AATGGGCT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG378	`ATGGGCTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG376	`TGGGCTTT`		PPDB Motif	`GCCCA`	PLACE Motif	`TGGGCY`
	AtREG559	`GGGCTTTG`		PPDB Motif	`GCCCA`	PLACE Motif
REG	`ACGGCGTCGTTTC`		+	2940386	2940398	-138	-126
	AtREG540	`ACGGCGTC`		PPDB Motif		PLACE Motif
	AtREG537	`GGCGTCGT`		PPDB Motif		PLACE Motif
	AtREG439	`GCGTCGTT`		PPDB Motif		PLACE Motif
	AtREG415	`CGTCGTTT`		PPDB Motif		PLACE Motif
	AtREG576	`GTCGTTTC`		PPDB Motif		PLACE Motif
REG	`TCAAAACGCC`		+	2940421	2940430	-103	-94
	AtREG653	`TCAAAACG`		PPDB Motif	`AAACG(C/G)`	PLACE Motif
	AtREG585	`CAAAACGC`		PPDB Motif	`AAACG(C/G)`	PLACE Motif	`CAAAACGC`
	AtREG650	`AAAACGCC`		PPDB Motif	`AAACG(C/G)`	PLACE Motif

Other Reliable Promoter Summary

TSS information

Type Sequence TPM score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	TPM score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

TSS information from cDNA

Type Sequence Score Genome position Gene model

Strand Position

Not Available Not Available Not Available Not Available Not Available

Type	Sequence	Score	Genome position	Gene model
			Strand	Position
Not Available	Not Available	Not Available	Not Available	Not Available

Core promoter information

Type Sequence Genome position Gene model

Strand Start End

initiator Not Available Not Available Not Available

TATA Box None None None

Y Patch None None None

GA None None None

Inr None None None

Type	Sequence	Genome position	Gene model
		Strand	Start	End
initiator	Not Available	Not Available	Not Available
TATA Box	None	None	None
Y Patch	None	None	None
GA	None	None	None
Inr	None	None	None

REG information

Type Sequence Annotation Genome position Gene model

Strand Start End

REG TAATTACG - 2939522 2939529 AT3G09560.1, AT3G09560.2, AT3G09560.3

AtREG646 TAATTACG ABA PPDB Motif PLACE Motif