PlantPromoterDB promoter information of AT3G09922.1
Summary of Gene (AT3G09922.1)
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Overview
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Focused view (chromosome 3: 3050171-3051370)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G09922.1 5'->3' (+) Promoter sequence TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G09922.1
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | T | 4 | + | 3050976 | -195 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | A | clone | + | 3050883 | -288 |
| TSS clone | T | clone | + | 3050886 | -285 |
| TSS clone | A | clone | + | 3050983 | -188 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | TGCTATAAAAC | + | 3050938 | 3050948 | -233 | -223 |
| Y Patch | CCCTCTCTT | + | 3050973 | 3050981 | -198 | -190 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | TATATGGG | + | 3050856 | 3050863 | -315 | -308 | |||
| AtREG620 | TATATGGG | PPDB Motif | GCCCA | PLACE Motif | |||||
| REG | TAAAACGC | + | 3050914 | 3050921 | -257 | -250 | |||
| AtREG564 | TAAAACGC | PPDB Motif | AAACG(C/G) | PLACE Motif | |||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| Not Available | Not Available | Not Available | Not Available | Not Available | |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||