Summary of Gene (AT3G10210)
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Overview![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
Genome position
from initiation codon TSS from cDNA TSS information AT3G10210 5'->3' (-) Promoter sequence AT3G10220.1
TSS from cDNA TSS information 3'->5' (+) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Type | Sequence | TPM score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS peak | G | 8 | - | 3161619 | -40 |
Type | Sequence | Score | Genome position | Position from initiation codon | |
Strand | Position | Position | |||
TSS clone | C | clone | - | 3161614 | -35 |
TSS clone | T | clone | - | 3161606 | -27 |
Type | Sequence | Genome position | Position from initiation codon | |||
Strand | Start | End | Start | End | ||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | GTATAAATC | - | 3161645 | 3161653 | -66 | -74 |
Y Patch | None | None | None | |||
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
Strand | Start | End | Start | End | |||||
REG | CACGTGTA | - | 3161693 | 3161700 | -114 | -121 | |||
AtREG453 | CACGTGTA | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACACNNG  | |||
REG | AAAACGACGT | - | 3161747 | 3161756 | -168 | -177 | |||
AtREG520 | AAAACGAC | PPDB Motif |   | PLACE Motif |   | ||||
AtREG415 | AAACGACG | PPDB Motif |   | PLACE Motif |   | ||||
AtREG493 | AACGACGT | PPDB Motif | ACGT  | PLACE Motif | ACGT  |
Type | Sequence | TPM score | Genome position | Gene model | |
Strand | Position | ||||
TSS peak | A | 2 | + | 3161792 | AT3G10220.1 |
Type | Sequence | Score | Genome position | Gene model | |
Strand | Position | ||||
TSS clone | C | clone | + | 3161785 | AT3G10220.1 |
Type | Sequence | Genome position | Gene model | |||
Strand | Start | End | ||||
initiator | Not Available | Not Available | Not Available | |||
TATA Box | None | None | None | |||
Y Patch | CGTCTCTCTC | + | 3161763 | 3161772 | AT3G10220.1 | |
GA | None | None | None | |||
Inr | None | None | None |
Type | Sequence | Annotation | Genome position | Gene model | |||||
Strand | Start | End | |||||||
REG | ACGTCATC | + | 3161497 | 3161504 | AT3G10220.1 | ||||
AtREG578 | ACGTCATC | ABA | PPDB Motif | ACGT  | PLACE Motif | ACGT  | |||
REG | TACACGTG | + | 3161693 | 3161700 | AT3G10220.1 | ||||
AtREG453 | TACACGTG | ABA, DREB1Aox | PPDB Motif | ACGT  | PLACE Motif | ACGT, ACGTG, ACACNNG  |