PlantPromoterDB promoter information of AT3G10370
Summary of Gene (AT3G10370)
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Overview
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Focused view (chromosome 3: 3227902-3229101)
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Genome position
from initiation codon TSS from cDNA TSS information AT3G10370 5'->3' (+) Promoter sequence AT3G10380.1
TSS from cDNA TSS information 3'->5' (-) Promoter sequence TSS tag distribution(+)
TSS tag distribution(-)
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Promoter Summary of AT3G10370
TSS information
| Type | Sequence | TPM score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS peak | A | 4 | + | 3216394 | -108 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Position from initiation codon | |
| Strand | Position | Position | |||
| TSS clone | T | clone | + | 3216395 | -107 |
Core promoter information
| Type | Sequence | Genome position | Position from initiation codon | |||
| Strand | Start | End | Start | End | ||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | TTTCTTCTTCTTCTT | + | 3216419 | 3216433 | -83 | -69 |
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Position from initiation codon | |||||
| Strand | Start | End | Start | End | |||||
| REG | AGCCCACT | + | 3216239 | 3216246 | -263 | -256 | |||
| AtREG510 | AGCCCACT | PPDB Motif | GCCCA | PLACE Motif | TGGGCY | ||||
Other Reliable Promoter Summary
TSS information
| Type | Sequence | TPM score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS peak | A | 17 | - | 3228931 | AT3G10380.1 |
TSS information from cDNA
| Type | Sequence | Score | Genome position | Gene model | |
| Strand | Position | ||||
| TSS clone | A | clone | - | 3228933 | AT3G10380.1 |
| TSS clone | A | clone | - | 3228858 | AT3G10380.1 |
| TSS clone | C | clone | - | 3228857 | AT3G10380.1 |
| TSS clone | C | clone | - | 3228837 | AT3G10380.1 |
| TSS clone | A | clone | - | 3228820 | AT3G10380.1 |
Core promoter information
| Type | Sequence | Genome position | Gene model | |||
| Strand | Start | End | ||||
| initiator | Not Available | Not Available | Not Available | |||
| TATA Box | None | None | None | |||
| Y Patch | None | None | None | |||
| GA | None | None | None | |||
| Inr | None | None | None | |||
REG information
| Type | Sequence | Annotation | Genome position | Gene model | |||||
| Strand | Start | End | |||||||
| REG | None | None | None | ||||||